Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1202 ATGGACGGCGGCGAAACTCCCCTATGTGGGCTGGATAAGGAGGAGAATGATGAAGAGGACGCCCCAGATTGTCTCTCCCGAGCTCGACTCGTCGATGATCCCATACTCTTATTTGTTTGCTTCCACAAGGCTCTGCGCGGGGAACTCGACAATCTTCGGCGCTTGGTGGAAACGGCGTCGTTGGAGAATGTGTCACACAGCCGCGAGCTAATCCTTAAGCTTCAACGAAGATTCGAGTTTCTCAAACTTGTTCTTAAGTATCATTGCGTTGCGGAAGATGAGGTTATCTTCCCTGCACTGGATGTACATGTTAAAAATGTTGTCTGTACATATTCCCTTGAACATAATAGCACCGATGACCACTTCAATTCTATCTTTCACTATTTGGATGAATTGATGGAACCAAATGAGAATATTTCCAAGCTGTTTCAAGAACTTGTATACTGCATTGGAATCTTGCAATCCACCATATTCCAGCATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTCTTGATGCAGAAATTTTCTACCAAAGAACAGGCTTCATTTGTTTGGCAATTCATATGTAGTGTTCCTATAATATTGTTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCAGCAGACAAACAAGCAGAAGTTAGGCAGTGTTTACATGAAATTGCACCAATGGAAAAAGAACTGCAAGAGGTTTTGAGTAATTGGATTGGTAGCAACACCCAAACCGTTGATGAGGTTTGTTTTCAGAGTGAAGGAGTTCAATGTGCTGAGGGACCCTTACATATGGAAAGATCACTTGGGTTGAGTTATTGTAATAGAAATTTCAAAAAAATTTCAAATCAGATGAAAGTCAATTGTTTAGACATAGAAGATGGAGCCAACCGGGTTAACGTTCTTCATCTTTGGCATGATGCCATCAAGAAAGATGTGAAAGAAATTCTAGAAGAACTTCATCAAATTAGAAACTCAACCTGTTTCCAGAATTTGGACTCATTACTCATCCAACTGAAATTCTTTGCTGATGTCCTTATCTTTTACAGCAATGCTCAGAAGAAAATGTTTCATCCTGTTTTGAATGAACTGGGTCATGGTTGGTTGACTAAGTCTACAGAACAATTTCTTGGCAAAAGTCAAATTGAAGATCTACAGCGGTTGCTACTCTATAATGCTGAAAGTGGTATGGCTTTGGGCAAATTCGTAGAGAGGCTTTGCAGAGAGCTTGAATTATTCACGATGGGAGTCAACAAACAATTTGCTTTTCAAGAGACTGAGGTTTTTCCTGTCATCAAAATGAACCCCAATGGAATGCTAGAAAGGGTTCTAAGCTTGAGCCTGCATATGATGCCACTTGGGTTGCTTAAGTGTGTGATAACTTGGTTTTCAGCTCACTTGTCTGAGAATGAATCGAGGTTCACCCTCTATTGCATTAAACAAGGAAATCCTTTTGTCCATGAATCTTTTGCATCACTATTACATGTGTGGTTCCGTGTTGGTTATTCAGGCAAAACCTCCATTGAAAAGTTCCGACAGGACTTGCGGCATATTTTCAAAAGCAAAAGCTCTTTTTTACCTGAGCAAGTTAAGGAAGCTCCTAGGTTTTCTTCCTTAAATTCTGACAAACCTCATAAAGGATCTATTATCTCTGGCAATAATTGTTTGTCTAATTCCTTATCTTCTGGAATCAACAATGTGACACAATATGAGACACCATACTCTACAGGAATTATTCTGCATATATTTTTCCCTGCCGCAGTTATGAAGTTACATCACTATCCTAGATTTCAAGCAGCAAATAGTTCTTCTATTCCCTTTCTTGATGATCCAAAACCAATTGACCTAATATTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGATTACCTTGTTTTTGGTTCAGCTCAGTTACAAAAAAATATTGAGTTGCTTGGGGATTTCCAAAAACGATTCCATCTCATATGCTTTCTTCATCAAATCCATAGTGATGCGGAGGATGAGATAGCATTTCCAGCTTTGGAGGCAAAGAATAAAGTCAAAAACATTAGCTGCTCCTACACCATTGATCACAAACTTTCAGTTGAACACTTCAATAAAATATCCTGCATCCTTGATAAGATGTCTGATCTACATCTTTCGGTTTCTAGTTTTGAAAAAAATACATGGGAGCAGAGGATGCTAAAGCATCATCAACTGTGCAGAAAGCTGCAAGAGATGTGCAAATCAATGCATAAACTACTTTCTGACCATATAAATCGTGAAGAAATTGAAATTTGGCATTTAATTAGAGATGACTTCTCCAATAAAGAGCAAGGGAAAATCATAGGTTGCATGCTTGGAAGAATTAAAGCAGAAATATTACAAGATGTGATACCGTGGTTAATGTCATCTTTAACCCCAGAAGAACAGCATGTCTCAATGTTCTTATGGTCCATGGCTACCAAAAATACAATGTTTGATGAATGGTTAGCTGAATGGTTGGAGGGATACAGTATAGTAACGGAAACAGAGAAATCAAATGATCCTCCTCTGCAGACTGTTGAGCCATTGGAGATCATATTTAAATATTTATCTGAAGAAGTTCTTGATGAATTACAAGAAGAATCCTCTTCCAACAAAAGCAAAAAAATTTCGCAGAAGGATTTTACTGCTGATGATAATGAGCTGTCTCACAATTGCTTTCTTGATGGCAAAGCCAAGGGTTTTAATGCAAAGCAAGATAATAGTGAACGTTCAGTATGCATAAATCAATTGTGTGATAATAACAAACAAACAAGCACTAAAGTAACAGATATCATTAGTTCAATCAATGATAAAGGTCAATCTTTTCAATTTTGTGAAAATTCTGGGCATTATGACCGTCTTATGAAAATAAGTCAAGATGATCTGGAGATGGCCATAAGAAGGGTGTCTCGTGACTCTTCCTTAGATCTGCAGAAGAAGTCATATATAATCCAGAACCTGCTGATGAGTCGTTGGATTGTGAGACAGCAGATGTCTAATTCAGAAGTCACTGTCACAAGCGATGGGCAGGAATTTCCTGGCCAGCATCCATCTTATAAGGACCCTCTCAAACAAATCTATGGCTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCTGCCTGTTGCAATCAGCTTTATGCATGCTTACATTGCCATAATGAGGTATCAGATCATTTAGTTGACAGGAAATCTATTACAAAGATGATGTGCATGAAGTGCTTGATGATTCAGCCAATCAGTGCCACATGTTCAACAGTATCTTGCAGTAACTTATCCATGGCAAAATACTACTGCAGGATCTGTAGATTATTTGATGATGAAAGGGAAATTTACCACTGTCCATATTGTAACCTGTGCCGAGTTGGAAAGGGCTTGGGTGTAGACTACTTTCATTGTATGAATTGCAATGCATGTATGTCTCGTTCCCTTACTGTACATATATGCAGGGAGAAATCTTTAGAGGATAATTGCCCAATTTGTCATGAATATATCTTTACATCCTGCTCTCCAGTAAAGGCCCTTCCATGTGGTCATGTGATGCACTCCACATGTTTTCAGGAATATACCTATTTTAACTATACCTGCCCAATATGTTGCAAGTCACTTGGAGACATGCAGGTATACTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAAAATTCAAGACGAGCATTTGGGTCAAACTCAGGTTATACTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCACAAATGCTCTTTTTGTGGTTCCTACAACACCAGAGTTCTTTGA 3798 0.3873 MDGGETPLCGLDKEENDEEDAPDCLSRARLVDDPILLFVCFHKALRGELDNLRRLVETASLENVSHSRELILKLQRRFEFLKLVLKYHCVAEDEVIFPALDVHVKNVVCTYSLEHNSTDDHFNSIFHYLDELMEPNENISKLFQELVYCIGILQSTIFQHMLKEEEQVFPLLMQKFSTKEQASFVWQFICSVPIILLEEVLPWMVSFLSADKQAEVRQCLHEIAPMEKELQEVLSNWIGSNTQTVDEVCFQSEGVQCAEGPLHMERSLGLSYCNRNFKKISNQMKVNCLDIEDGANRVNVLHLWHDAIKKDVKEILEELHQIRNSTCFQNLDSLLIQLKFFADVLIFYSNAQKKMFHPVLNELGHGWLTKSTEQFLGKSQIEDLQRLLLYNAESGMALGKFVERLCRELELFTMGVNKQFAFQETEVFPVIKMNPNGMLERVLSLSLHMMPLGLLKCVITWFSAHLSENESRFTLYCIKQGNPFVHESFASLLHVWFRVGYSGKTSIEKFRQDLRHIFKSKSSFLPEQVKEAPRFSSLNSDKPHKGSIISGNNCLSNSLSSGINNVTQYETPYSTGIILHIFFPAAVMKLHHYPRFQAANSSSIPFLDDPKPIDLIFFFHKAIKKDLDYLVFGSAQLQKNIELLGDFQKRFHLICFLHQIHSDAEDEIAFPALEAKNKVKNISCSYTIDHKLSVEHFNKISCILDKMSDLHLSVSSFEKNTWEQRMLKHHQLCRKLQEMCKSMHKLLSDHINREEIEIWHLIRDDFSNKEQGKIIGCMLGRIKAEILQDVIPWLMSSLTPEEQHVSMFLWSMATKNTMFDEWLAEWLEGYSIVTETEKSNDPPLQTVEPLEIIFKYLSEEVLDELQEESSSNKSKKISQKDFTADDNELSHNCFLDGKAKGFNAKQDNSERSVCINQLCDNNKQTSTKVTDIISSINDKGQSFQFCENSGHYDRLMKISQDDLEMAIRRVSRDSSLDLQKKSYIIQNLLMSRWIVRQQMSNSEVTVTSDGQEFPGQHPSYKDPLKQIYGCKHYKRNCKLFAACCNQLYACLHCHNEVSDHLVDRKSITKMMCMKCLMIQPISATCSTVSCSNLSMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLTVHICREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTYFNYTCPICCKSLGDMQVYFRMLDALLAEEKIQDEHLGQTQVILCNDCEKKGAAPFHWLYHKCSFCGSYNTRVL 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1202 1265 MobiDBLite consensus disorder prediction 1 20 - -
Glsi13g1202 1265 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 657 1265 - -
Glsi13g1202 1265 SMART ring_2 1159 1200 IPR001841 -
Glsi13g1202 1265 FunFam Zinc finger protein-related isoform 1 1154 1203 - -
Glsi13g1202 1265 ProSiteProfiles Zinc finger CTCHY-type profile. 1095 1158 IPR017921 -
Glsi13g1202 1265 ProSiteProfiles Zinc finger RING-type profile. 1159 1200 IPR001841 -
Glsi13g1202 1265 ProSiteProfiles Zinc finger CHY-type profile. 1023 1092 IPR008913 GO:0008270
Glsi13g1202 1265 CDD Hr-like 614 759 - -
Glsi13g1202 1265 SUPERFAMILY Zinc hairpin stack 1096 1150 IPR037275 -
Glsi13g1202 1265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1152 1202 IPR013083 -
Glsi13g1202 1265 Pfam Zinc-ribbon 1206 1263 IPR039512 -
Glsi13g1202 1265 Gene3D - 1230 1265 - -
Glsi13g1202 1265 Pfam Hemerythrin HHE cation binding domain 42 172 IPR012312 -
Glsi13g1202 1265 SUPERFAMILY RING/U-box 1146 1205 - -
Glsi13g1202 1265 CDD Hr-like 41 170 - -
Glsi13g1202 1265 CDD RING-H2_Pirh2-like 1158 1200 - -
Glsi13g1202 1265 Gene3D nmb1532 protein domain like 33 190 - -
Glsi13g1202 1265 Gene3D nmb1532 protein domain like 608 779 - -
Glsi13g1202 1265 SUPERFAMILY CHY zinc finger-like 1021 1086 IPR037274 GO:0008270
Glsi13g1202 1265 Pfam CHY zinc finger 1030 1105 IPR008913 GO:0008270
Glsi13g1202 1265 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1202 Glsi-ChrGlsi13 29507994 29523051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1202 606 845 C2H2 Transcription Factor Family AT3G18290 22.857 5.78e-12 68.6