Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1201 ATGGGGCATAAAAATCGAAACCCTGCACCGCGTTCCAAGCAATCTGCGGCGGCTTCTCCGGTGACACAATCTGCCATCGGCGGAGCCGCCAATGGTCCCACTTCAGCCGAGTCCGAGTTGTGCATGAATTCTGAACACACTCTTCATAGCTCGACTAAGATCGAACTGCCTCCTCAACCGGACACTTCGGCCTACTCCACAATCAAGCTTGAATGTGAACGAGCCCTCAATGCGCTCAGGCGTGGTAGCCACACCAAGGCACTGAGGCTTATGAAGGAGTTATGTTCCAGACACGAGAACTCGGCTTACTCGGCCTTGATTCACCGAGTTCAGGGTACTGTGTGTGTCAAAGTGGCGGCGATTATTGATGACCCAAGTGCGAAGCAACGCCATTTGAAGAATGCTATTGAGGCGGCGCGAAAAGCAATTGAGCAGTCGCCCAGTTCTATTGAGTACGCACATTTTTATGCAAATTTGTTATATGAGTCAGCAAATGATGGGAAGGAGTATGAGGAGGTGGTGCAGGAGTGTGAGAGGGCACTCTCGATTGAAAATCCAGTTGATCCTGCGAGGGAGAGATTGCAGGATGGGAGCCAGCAGAAATTATCAACTGCTGACACCCGGATAGCACATGTGCAGAATGAGTTGCGGCAGCTAATTCAGAAGTCAAACATAGCTTCTTTATCGACTTGGATGAAAAATCTGGGTAATGGGGAGGAGAAATTCCGTTTGATTCCATTAAGGAGGGCTACAGAGGACCCAATGGAGGTGAGGTTGGTTCAAACTAGAAGGCCAAATGAGATCAAGAAGGTGACCAAGACACCTGAAGAGAGAAGAAAAGAAATTGAAGTTCGAGTGGCTGCTGCAAGGTTGTTGCAGCAGCAAAAGTCAGAGTCACCCCCATCCCAGAATGAACGAGATAGGGATGACAGAACATTGGATTCATCTTCAGGATGCGGGCAGAGGATAAACGAGAGGCGGAAGAATGGACATATGCGAAAAGCTGGCTCTACAGGTGAAAGGAGAGATTGGGTATGTTCATATTGGAATTCAATGAATATTGATATGAAGAAGGAGTTGCTTAGGATTAGGGTTTGTGATCTCAAATCCCACTTTGGGTCTTCAAAGGATACTTTGCTGAGTGACATATTAGCAGAAGCTTTGTCCTATGCTGAGACCAATAAAACATGGAAGTTCTGGCTTTGCTGTCGTTGTAATGAGAAATATTCAGATTCGGAATCTCACATGCAGCATGTTGTGCAGGAACACATGGGAAATCTCTTACCTAAAATGCAGAAACTTTTGCCTCAAAATGTTGATAATGAATGGATTGAGATGGTTATTAATTGTTCCTGGAAGCCTCTGGATGCCTCAGCTGCAGTTAAAATGCTTGAAAATCAAGCAAAATGCGAAGATTCTACATTCCCTGAGGATACCTATAGGGATCTTCTTATTGAGGAGCACCATGACTGTTTTAAAGATACAACTAGTTCCTACCCTGAGAAGGGGCATACTCTTCATAATTGCACAACTGAAAGAAGTAATTATAGTAAAACAGCTGAAACTAAGATTGCAGAAGGTGTTGAGGTCCAAGGGTCTATGGTATATTCCCTTGCTGATGGTTGGCCAATATCTGATGACTTTGAGCGTGTGAAACTTCTTGAGAAAATTCATGCAGTATTAGAGACACTTATTAGACACAAATATCTTGCTGCCAGTCATCTTAGCAAGGTCATAAAGTTTACTATGGAGGAAATACAGGGTCTTGCTGCTGGTTCTCAGCTTCTGAACCATGGTTTAGACCAAACACCAACGTGCATCTGCTTTCTAGGAGCTTCTCAGCTTAAGAAAATTCTCAAATTTTTGCAGGAACTATCTCATGCTTGTGGTTTGGATAGATATGCTGAGAATAGTAGTCCCATGAATTATTTACACAATGCCAATCAAGGTCCTGAGATTAAAGAGAAGATTGTTCTCAATGGAAATGCATCATGCCTCCTTCTGGATGATTCTTTAGTGCCAACAGAATTCACTCCTGGTGCAGCTCAGAATGCTGTCTTGGATGACGTGATTGCCCCAACTTCTAATGGTGGAATTTTACACAATAGTGATACTTTCTTATCCTGGATATTTTTGGGTTCATCTAGTGGGGATCAATTGGCATCATGGCTGCGCACAAAAGCAGATAAGAGACATCAAGGAATGGAAATTGTCCAGACACTTGAGAAGGAGTTTTATCACCTACAAGGCCTTTCTGAGAAGAAGTGTGAGCGTATGAGTTATGAGGAAGCACTGCAGGCAATAGAGGACCTTTGTCTTGAAGAAGGTAAGAAGAGGGAAAATTTCACTGAATTTGTGCAGCGAAGCTATGAATCTGTTCTAAGAAAGCGGAGAGAAGAGCTTGTTGAGCGTGAGAATGATGTAATGTATCCTGGCAATAGGTTTGAGTTGGATGCCATAACAAATATTCTGCAAGAAGCAGAAGCAATGAATGGTAATCAATTTGTTTATGAGGAAACTTATGCTGGTGTGACTTCTCAGTTATGTGATTTGGAATCTGGCGAAGATGATGAATGGAGAATGAAGGACTATTTGCATCAAATGGATAGTTACATAGAAATTGCTATTCAGAAACTGAAAGAACACTTAAGTGTAGAGCTTAGCAAAATTGATGCACGAATCATGAAAAGTGTTACAGAGATGCAGCAGTTGGAACTCAAGCTTGAGCCTGTTTCTGCTCATGATTATCGAGCAATATTACTGCCGCTAGTGAAGTTGTACCTAAGGGCACTTTTGGAAGACTTGGCTGAGAAAGATGCAAGGGAGAAGTCTGATGCTGCAAGAGAAGCATTTTTGGCTGAGCTTGCTCTTGATTCAAAGAAGATTGTTAAAGGGGGAAGTGATAGCACAAGACATACAGAGAAGACAAAAGATAAGAAAAAGAATAAAGAGAACAGAAAAACAAGAGATTCGAAGGCTACAAGTGGTCATGAGCAACTCTTTCTTGACGCAACCATTCCAGATTCCTATTCAATTACTCTTGATAATAATCATCAAGATCCTGAGGTTCTTGTTTCTATGAATGGCAATGACTTGGAACAACAGGAAGAGGAACTTAGACATAAAAGCGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAGTTTCAGAGACGGATAGAAAATGAGGCTAAACAGAAGCACCTAGCTGAGCAACAAAAGAAATCCTCTGGGACAGATTTAGAGAAGTTGGCTGACAAAGTTCTGGATGCTCAATTAAAGGTTGTTACTGATGGTCCAGATATAGATGAACATATGAGACCAACTATGTGGCGGCAGTTAACAAATGAGAATGGTTACCCTAGCAATTTGGATGGTGTTCTTATTACCACAGCAAATGGTTCTGCAGTGCTAATTAAATCTTCATCCGATTCAAGTAGTCAAAAGATTCATCATATGCATCAATCAAAAGTTAAACAAGATCTGCCTAACAGAGGACTTCCAGATAATGGTTTTCAGTTGCCTGAACAGCGTACAGGAAAAAAGGGTAAACGGCATAAAAATGCTTCCAAATTGGTTGATGGAAAGTTTGACGCGGTCTCATTGGACAAAGAGAACATTGAGGATACACATACTGGTAATCACTTAAGAGAGCATGTTAGACTCCATAACAATCAAGATGCTAACAACATGAGGGGGGACAATGGTTTAAAGACTCTGAAAGAGTTGCAAGTGGAAAACGATGAGGAAGAAAGATTCCAAGCTGATCTTAAAAAAGCTGTACGCCAAAGTCTGGACTCATATCAAGCACTTCAAAAATTGCCTTCGGTTTCAAGATTGAGAACTCCAGAGAGAGCTGCTTCACGTGTACATGATTCTGGTGTTCTACCGGAGGGAGACACAAATGAGAATGTGAATGGAGCTGCTTTTCTTGGTACTGGGCTGAAGAATGAAGTGGGTGAATATAATTGCTTTCTCAATGTTATCATACAAGTAGGTCTTTTGCAATCCTTGTGGCATTTAGGGCGTTTCCGGGAGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAATCCTTGTGTTGTCTGTGCCTTGTATGAAATCTTTGCTGCCATGGGCATTGCATCAAAGGATTGCAGGAGAGAAGCAGTAGCACCTACTTCTCTGAGGATAGCTCTAAGCAACCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCCTCTGAAGTACTGGCAGTGATATTTGACTGCCTTCATCGATCATTTACTTGTGATTCAAGTGTTTCTGATACAGAATCAGTGGAAAGCAATTCTATGGGATCTTGGGATTGTGCAAACAGTAGTTGTATAGCACATTCACTCTTTGGAATGGACATTTTTGAACGAATGAATTGCTACTATTGTGGTCTTGAGTCCAGACATCTGAAATATACTTCCTTCTTTCACAATATAAATGCGAATGCCCTCCGGACCATGAAGGTAATGTGTAGTGAAAGCTCTTTTGACGAGCTTTTGAATTTTGTGGAGATGAATCATCAGGTGGCTTGTGATCCAGAAGCTGGTGGCTGTGGCAAGCTAAACTACATCCATCACTTTCTTTCAACTCCACCCCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACAAGTGAGAGTGCTGATGACATAACAGCAACTCTGGCAGCCCTGAGCACCGAGCTAGACATCAGTATCCTTTATCGTGGTTTAGATCCAAAAAGCACTCATAACTTGGTTTCAGTGGTTTGCTACTATGGGCAACATTATCATTGCTTTGCCTATAGCCATGACCATGAACAATGGATTATGTATGATGATAAGACAGTCAAGGTAATTGGTGGGTGGGCTGATGTTCTTACAATGTGTGGAAGAGGGCATCTACAGCCTCAGGTTCTTTTCTTCGAAGCTGTCAGTTTTGATACAGGGTTTAAAAGGAAGGACTGGTTCTCGGGGGAGAATCAAAGTGTGGCGAGAAAAATTACCCTTAAAAGTGGTACAACCCATGCCTGTGCAGCATGCAAATATCAAAGGAGAAAGTGCACTCCCGAGTGCCTTCTTGCTCCATACTTCCCCGCAGACCAACCCAGGGTGTTTCAGAATATCCACAACTTAGTTGGAGTGAGCAACATCAGAAAGATATTAAAGAACTTGGATCCTAGTCGGAAGAAAATAGCTATGGAATCCATCATTTGTCAAGCAAATTTAAGGGATAAGTATCCTGTGCATGGCTGTTGGGAGGAAATTTGCAGGCTACGTTACCAAATATGGCAGGTGGAAGAAGAGCTTCATGCTGTTTATCAACAACTTGATATGTGCCGACAACTTTATCAGCATCAAGATTCTTTAATGGTTGATGCCGTGACTTCACAGCTAGGGTTGGGCATAGTACCTCGTACTAATGGCCTCCCACTCTTCAATCATAGTCCACAGCCACAGACATACAACATATGGGCTGCTTTACCTATTTCCCAGCAACATTCTTATTCCAATAGCAATAGTGTAGCTTACAATTCCATTTACATGGATTCCAAGGATAATGTTACAAATTCTTCGTGGGTTCAGTATCTCTGCTCAGATAACAACAGCAATTCTGTGTCAATGGATTCTCAGTTGGTTGCCTCGGGGCCACTAACCATCCAACAAGAAGTTATTGAAGAGTATTATGATGAGATGCATCCATTTTTTGATACAACTGATGATAGACAATCGTACATTTATTCTAAGGAGGCTTATGAGTCAAGTTCAGAAGATTCACTGAAAGAAACGAGAAAGTGCATTGAGCAGGTTGCTGAGAATGAATTGAAGAATGCGGCTGCATGCTTCAGCCTTACCAGCGTAAACTGA 5889 0.4218 MGHKNRNPAPRSKQSAAASPVTQSAIGGAANGPTSAESELCMNSEHTLHSSTKIELPPQPDTSAYSTIKLECERALNALRRGSHTKALRLMKELCSRHENSAYSALIHRVQGTVCVKVAAIIDDPSAKQRHLKNAIEAARKAIEQSPSSIEYAHFYANLLYESANDGKEYEEVVQECERALSIENPVDPARERLQDGSQQKLSTADTRIAHVQNELRQLIQKSNIASLSTWMKNLGNGEEKFRLIPLRRATEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQQKSESPPSQNERDRDDRTLDSSSGCGQRINERRKNGHMRKAGSTGERRDWVCSYWNSMNIDMKKELLRIRVCDLKSHFGSSKDTLLSDILAEALSYAETNKTWKFWLCCRCNEKYSDSESHMQHVVQEHMGNLLPKMQKLLPQNVDNEWIEMVINCSWKPLDASAAVKMLENQAKCEDSTFPEDTYRDLLIEEHHDCFKDTTSSYPEKGHTLHNCTTERSNYSKTAETKIAEGVEVQGSMVYSLADGWPISDDFERVKLLEKIHAVLETLIRHKYLAASHLSKVIKFTMEEIQGLAAGSQLLNHGLDQTPTCICFLGASQLKKILKFLQELSHACGLDRYAENSSPMNYLHNANQGPEIKEKIVLNGNASCLLLDDSLVPTEFTPGAAQNAVLDDVIAPTSNGGILHNSDTFLSWIFLGSSSGDQLASWLRTKADKRHQGMEIVQTLEKEFYHLQGLSEKKCERMSYEEALQAIEDLCLEEGKKRENFTEFVQRSYESVLRKRREELVERENDVMYPGNRFELDAITNILQEAEAMNGNQFVYEETYAGVTSQLCDLESGEDDEWRMKDYLHQMDSYIEIAIQKLKEHLSVELSKIDARIMKSVTEMQQLELKLEPVSAHDYRAILLPLVKLYLRALLEDLAEKDAREKSDAAREAFLAELALDSKKIVKGGSDSTRHTEKTKDKKKNKENRKTRDSKATSGHEQLFLDATIPDSYSITLDNNHQDPEVLVSMNGNDLEQQEEELRHKSELEEEEKKLEETLEFQRRIENEAKQKHLAEQQKKSSGTDLEKLADKVLDAQLKVVTDGPDIDEHMRPTMWRQLTNENGYPSNLDGVLITTANGSAVLIKSSSDSSSQKIHHMHQSKVKQDLPNRGLPDNGFQLPEQRTGKKGKRHKNASKLVDGKFDAVSLDKENIEDTHTGNHLREHVRLHNNQDANNMRGDNGLKTLKELQVENDEEERFQADLKKAVRQSLDSYQALQKLPSVSRLRTPERAASRVHDSGVLPEGDTNENVNGAAFLGTGLKNEVGEYNCFLNVIIQVGLLQSLWHLGRFREEFLGRSRSEHDHVGNPCVVCALYEIFAAMGIASKDCRREAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTCDSSVSDTESVESNSMGSWDCANSSCIAHSLFGMDIFERMNCYYCGLESRHLKYTSFFHNINANALRTMKVMCSESSFDELLNFVEMNHQVACDPEAGGCGKLNYIHHFLSTPPHVFMTVLGWQNTSESADDITATLAALSTELDISILYRGLDPKSTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWADVLTMCGRGHLQPQVLFFEAVSFDTGFKRKDWFSGENQSVARKITLKSGTTHACAACKYQRRKCTPECLLAPYFPADQPRVFQNIHNLVGVSNIRKILKNLDPSRKKIAMESIICQANLRDKYPVHGCWEEICRLRYQIWQVEEELHAVYQQLDMCRQLYQHQDSLMVDAVTSQLGLGIVPRTNGLPLFNHSPQPQTYNIWAALPISQQHSYSNSNSVAYNSIYMDSKDNVTNSSWVQYLCSDNNSNSVSMDSQLVASGPLTIQQEVIEEYYDEMHPFFDTTDDRQSYIYSKEAYESSSEDSLKETRKCIEQVAENELKNAAACFSLTSVN 1962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1201 1962 Pfam Lateral organ boundaries (LOB) domain 1684 1780 IPR004883 -
Glsi13g1201 1962 SUPERFAMILY Cysteine proteinases 1315 1650 IPR038765 -
Glsi13g1201 1962 Gene3D Tetratricopeptide repeat domain 59 219 IPR011990 GO:0005515
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 964 996 - -
Glsi13g1201 1962 Coils Coil 202 222 - -
Glsi13g1201 1962 ProSiteProfiles LOB domain profile. 1683 1784 IPR004883 -
Glsi13g1201 1962 Pfam Protein of unknown function (DUF627) 74 185 IPR006866 -
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 8 38 - -
Glsi13g1201 1962 Gene3D Cysteine proteinases 1303 1651 - -
Glsi13g1201 1962 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1321 1652 IPR028889 -
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 1033 1052 - -
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 301 315 - -
Glsi13g1201 1962 Coils Coil 1242 1265 - -
Glsi13g1201 1962 Coils Coil 751 771 - -
Glsi13g1201 1962 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1652 - -
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 1 38 - -
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 1145 1168 - -
Glsi13g1201 1962 ProSitePatterns Zinc finger C2H2 type domain signature. 402 423 IPR013087 -
Glsi13g1201 1962 Pfam Protein of unknown function (DUF629) 346 873 IPR006865 -
Glsi13g1201 1962 Pfam Ubiquitin carboxyl-terminal hydrolase 1316 1628 IPR001394 GO:0004843|GO:0016579
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 292 336 - -
Glsi13g1201 1962 Coils Coil 1029 1069 - -
Glsi13g1201 1962 MobiDBLite consensus disorder prediction 963 999 - -
Glsi13g1201 1962 CDD Peptidase_C19 1411 1650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1201 Glsi-ChrGlsi13 29494541 29507114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1201 58 1650 C2H2 Transcription Factor Family AT3G47890 58.199 0.0 1755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi13g1201 DUF629 4.9e-162 No_clan