Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1199 ATGGGGAACTGCTGCGTGAGAGCAGAGGTCGTAGATGACAAGTCCAACCACTTAAATCATGGGGAAAAGAAGAAAAGCAGGGAGGGAGGACCGAACCCCTTTGCACAGGAAGCAATTCATTCAACGGCTCCGATCCGGGTCTTGAAGGACGTGATTCCTCTGAGTCAGCGAACCCGAATTAGCGATAAGTACATACTGGGTCGCGAGCTGGGTCGTGGAGAGTTTGGAATCACCTACCTTTGCACCGACAGAGAGACAAAGGAAGCACTAGCTTGCAAGTCAATTTCGAAACGGAAGCTGAGGACGACGGTGGATTTAGAGGACGTAAGGCGCGAGGTTGCTATAATGTCTACGTTACCTGACCATCCAAACATCGTCAAGCTCAAGGCAACTTACGAGGACAACGAAAACGTGCACCTTGTTATGGAGCTGTGCGAGGGTGGTGAGCTTTTTGACCGAATTGTAGCTAGAGGTCATTACAGTGAACGAGCAGCGGCGAACGTAGCCAGGACGATTGCAGAGGTTGTGAAGATGTGCCACGCCAACGGGGTTATGCATAGGGACCTGAAGCCTGAGAATTTCCTTTATGCCAACAAGAAAGAGAACTCCGTCCTCAAGGCCATCGATTTCGGCCTCTCTATTTTTTTCAAGCCTGGACAGAGGTTCTCGGAGATTGTTGGGAGTCCTTACTATATGGCGCCGGAGGTTTTGAAAAGAAACTATGGACCGGAGGTTGACATATGGAGCGCCGGAGTGATTCTTTATATTTTGTTATGTGGCGTTCCTCCATTTTGGGCAGAGACCGAACAAGGCGTTGCTTTGGCAATTCTGAGGGGCGTAATTGACTTTAAGAGGGAACCCTGGCCTCAGATATCGGATAGTGCTAAAAGCCTAGTGCGTCAGATGTTGGAACCGGATCCTAAGAAGCGCTTGACAGTTGAGCAAGTGCTTGAACATTCCTGGCTACAAAATGCAAAGAAAGCTCCTAATGTTCCCTTAGGAGATATCGTGAGGTCAAGACTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAGAGCCCTCCGGGTAATTGCCGAACATTTATCTGTTGAAGAGGTAGAAATAATCAAAGATATGTTCACATTGATGGATGCTGACAAAGATGGCAAAGTAACATATGAGGAACTGAAGGCTGGGTTGCGGAAGGTGGGTTCGCAATTGGCTGAGCCAGAGGTAAAAATGCTGATGGAAGTGGCTGATGTTAATGGGAACGGAGTACTAGACTATGGAGAGTTTGTAGCCGTGACAATTCACTTGCAGAGAATGGAGAATGACGAGCATTTCCACAAAGCATTCAAGTTCTTTGACAAAGATGGGAGTGGTTATATTGAGTTAGGTGAGCTACAGGAAGCATTAGCCGATGAGTCGGGTGAAACTGAAGATGATGTATTGAACGACATTATGCGTGAGGTTGACACTGACAAGGACGGCCGCATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACTGGAACAGACTGGAGGAAAGCATCTAGGCAGTATTCGAGGGAGAGATTTAAGAGTTTGAGCCTAAATTTGATGAAAGACGGCTCACTTCGGCTTCATGATGGGATTAGTGGTGAAGCTGTGGTGAAAACCAGTCTAAATCGCGTCAAGCCGCGTGTAGACTTCTATACAGATTATTGGATCCCAAGTCCAAATCCGTTCTCAACTTCTACCCAGTTGGGTGCTGCTGCACCACCAGATCTGATAATTGTGAGAGGGCAGCAACCTTCTCGTCAGATCGAAAACTCTCCATCCATGGCCTCATCTCCCTCTCCCTCCCTCTTCCTCTTCCTCTTCCTTTCTCTGATTTCCCTCTTCTTCTTCTCCCCTTCACTCGCCGAGATCCGTTTCTCCGAGATCCGAAACGACGACCGCCCCATCATTCCCTTTGACCAGTTTGGCTTCACCCACACCGGCCGCCTCGAGCTCAACGTCTCCAAGATCTCTTTCTCCAACTCAAATCTCGACCTCTCCAAGGTTGGTTTCTTCCTCTGCACCCTCGATTCCTGGCTCCATGTCCTTCAGCAGCTCGAAGATGGCGAGATTCGGTGCGCCCTTCAGTCCGATCTCATCAAGTCCGTCTATACCTTCAATTCCCTCAACGGCGCCGATTCCTTCAACCACCTTTTCCTCGAGAATGACGCTGATCAGTATAATCTTGTCTTTGCCAACTGCCATCAGCAGGAACTCAAAGTCTCCATGGACGTTCGATCTGCTATGTATAACCTTGATGGAAAGAGCGGCGTCCGCGATTACTTGTCCGCCGGCAGTACTATCCTCCCTAGGGTTTATTTCCTCTTCTCTTTGGTCTATTTCGCCCTTGCTGGTACCTGGATTTACATCCTCTACAAGAAGCGATTGACCATTTTCCATATTCATTTCTTTATGCTTGCCGTCCTCATCTTGAAAGCTTTGAATCTCTTGTGCGAGGCCGAAGATAAATCCTACATCAAGCGAACTGGAAGTGCCCATGGGTGGGATGTCATCTTTTACATTTTCAGTTTCTTTAAGGGAATCTCACTCTTCACTCTCATTGTATTGATCGGCACCGGATGGTCCTTCTTGAAACCATACCTGCAGGATAAGGAAAAGAAGGTTTTGATGATTGTTATCCCGCTTCAAGTTGTTGCCAACATTGCTCAGGTTGTCATTGATGAGAGTGGACCCTACGGCCATGATTGGGTCACTTGGAAGCAGATCTTTTTGCTTGTCGATGTTGTCTGCTGCTGTGCTGTTCTCTTTCCCATCGTCTGGTCCATCAAAAATCTGCGCGAGGCTGCAAGGACTGATGGCAAGGCCGCTGTTAATTTGATGAAATTGACTCTTTTCAGACACTACTACATTGTCGTTATCTGTTACATATATTTTACGAGGGTTGTGGTATATGCATTGGAGACTATAACCTCCTATCGGTATTCCTGGACCAGCGTCGTTTCTGCAGAGTTAGCCACTCTTGCCTTCTATGTGTTTACCGGTTACAAGTTTAGGCCCGAGGCGCACAATCCATATTTTGTGATTGACGATGAAGAGGAAGAGGCTGCCGCCGAGGCATTGAAGCTTGAAGATGAGTTTGAATTGTAA 3129 0.4746 MGNCCVRAEVVDDKSNHLNHGEKKKSREGGPNPFAQEAIHSTAPIRVLKDVIPLSQRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTTVDLEDVRREVAIMSTLPDHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAANVARTIAEVVKMCHANGVMHRDLKPENFLYANKKENSVLKAIDFGLSIFFKPGQRFSEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTVEQVLEHSWLQNAKKAPNVPLGDIVRSRLKQFSVMNRFKKRALRVIAEHLSVEEVEIIKDMFTLMDADKDGKVTYEELKAGLRKVGSQLAEPEVKMLMEVADVNGNGVLDYGEFVAVTIHLQRMENDEHFHKAFKFFDKDGSGYIELGELQEALADESGETEDDVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLRLHDGISGEAVVKTSLNRVKPRVDFYTDYWIPSPNPFSTSTQLGAAAPPDLIIVRGQQPSRQIENSPSMASSPSPSLFLFLFLSLISLFFFSPSLAEIRFSEIRNDDRPIIPFDQFGFTHTGRLELNVSKISFSNSNLDLSKVGFFLCTLDSWLHVLQQLEDGEIRCALQSDLIKSVYTFNSLNGADSFNHLFLENDADQYNLVFANCHQQELKVSMDVRSAMYNLDGKSGVRDYLSAGSTILPRVYFLFSLVYFALAGTWIYILYKKRLTIFHIHFFMLAVLILKALNLLCEAEDKSYIKRTGSAHGWDVIFYIFSFFKGISLFTLIVLIGTGWSFLKPYLQDKEKKVLMIVIPLQVVANIAQVVIDESGPYGHDWVTWKQIFLLVDVVCCCAVLFPIVWSIKNLREAARTDGKAAVNLMKLTLFRHYYIVVICYIYFTRVVVYALETITSYRYSWTSVVSAELATLAFYVFTGYKFRPEAHNPYFVIDDEEEEAAAEALKLEDEFEL 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1199 1042 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Glsi13g1199 1042 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Glsi13g1199 1042 SUPERFAMILY Protein kinase-like (PK-like) 61 599 IPR011009 -
Glsi13g1199 1042 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Glsi13g1199 1042 Pfam Protein kinase domain 66 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1199 1042 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Glsi13g1199 1042 SMART efh_1 369 397 IPR002048 GO:0005509
Glsi13g1199 1042 SMART efh_1 441 469 IPR002048 GO:0005509
Glsi13g1199 1042 SMART efh_1 405 433 IPR002048 GO:0005509
Glsi13g1199 1042 SMART efh_1 477 505 IPR002048 GO:0005509
Glsi13g1199 1042 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1199 1042 CDD EFh 441 503 IPR002048 GO:0005509
Glsi13g1199 1042 Gene3D Transferase(Phosphotransferase) domain 1 150 330 - -
Glsi13g1199 1042 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1199 1042 SUPERFAMILY EF-hand 350 529 IPR011992 -
Glsi13g1199 1042 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Glsi13g1199 1042 FunFam calcium-dependent protein kinase 13 150 330 - -
Glsi13g1199 1042 CDD STKc_CAMK 63 321 - -
Glsi13g1199 1042 Pfam EF-hand domain pair 440 503 IPR002048 GO:0005509
Glsi13g1199 1042 Pfam EF-hand domain pair 370 429 IPR002048 GO:0005509
Glsi13g1199 1042 Gene3D Phosphorylase Kinase; domain 1 65 149 - -
Glsi13g1199 1042 Gene3D - 331 506 - -
Glsi13g1199 1042 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Glsi13g1199 1042 Pfam Lung seven transmembrane receptor 733 1018 IPR009637 GO:0016020
Glsi13g1199 1042 FunFam Calcium-dependent protein kinase 7 331 506 - -
Glsi13g1199 1042 FunFam Calcium-dependent protein kinase 1 66 149 - -
Glsi13g1199 1042 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Glsi13g1199 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Glsi13g1199 1042 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 498 - -
Glsi13g1199 1042 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Glsi13g1199 1042 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1199 Glsi-ChrGlsi13 29476950 29483443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1199 1 544 EF-hand Containing Proteins AT1G18890 80.769 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi13g1199 Lung_7-TM_R 2.6e-49 CL0192