Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1197 ATGGGGGACAAGTCCCAAGTACTGGAGGCTGTGTTAAAGGAAGCTGTGGATTTGGTAATAGATCTGAATCACTGGAAGCCTTTCTTGGTTGCTATCTGTTCCTCGCTTCCATGGTCTGTTTTATTCATTGATTGGTCTCTTGGGTTCTGTTTGGTTTTTCTGAAAATGCAGGAAAACATACCCATTGAGGAAGTTTTAGAGAATCTGAGATGTAGCAGAGAAGGCCTCACCTCAGTTGCTGCTGAGGAGAGACTGACCATTTTCGGGCACAACAAGCTTGAAGAGAAAAAGGACAGCAAATTTTTGAAGTTTTTGGGTTTTATGTGGAACCCTCTGTCTTGGGTTATGGAGGCTGCTGCTATAATGGCAATTGCACTTGCCAATGGAGGGGGCAAGCCCCCTGACTGGCAAGACTTTGTGGGTATCATCACTCTGCTTGTCATCAATTCAACTATTAGTTTCATCGAGGAAAACAATGCGGGAAATGCTGCGGCCGCTCTCATGGCTCGTCTTGCTCCAAAAGCAAAGGTTCTTCGAGATGGTAGGTGGAATGAGCAAGATGCCTCGGTCCTGGTTCCTGGTGACATCGTCAGTATTAAACTTGGAGATATTATACCGGCGGATGCTCGTCTTCTTGAAGGGGATCCGTTAAAAATTGATCAGTCTGCACTTACAGGTGAGTCCCTGCCAGTGACGAAGGGGCCTGGTGATGGTGTGTATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGCTGTGGTCATTGCCACTGGCGTACATACCTTCTTTGGGAAAGCTGCTCACCTTGTAGATACCACTAATCAAGTGGGTCACTTCCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTGTTGAGATTATTGTTATGTATCCAATTCAAGACCGAAAATATCGTCCTGGAATTGATAACCTTCTTGTACTTCTTATTGGGGGAATTCCAATTGCCATGCCCACAGTTCTTTCAGTGACTATGGCTATTGGTTCTCATAGGTTATCTCAACAGGGAGCTATTACAAAGAGGATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTAACACTGAACAAGCTTAGTGTTGACAAAAATCTCATTGAGGTCTTTGCAAAAGGAGTGGATCCGGATACTGTTGTTTTGATGGCAGCTCAAGCCTCGAGACTTGAGAATCAAGATGCAATAGATTCTGCCATAGTTGGGATGCTGGCTGATCCCAAAGAGGCACGTGCTGGCATCCAAGAAGTACATTTTCTTCCTTTCAATCCTACTGATAAGCGGACAGCATTAACTTATATTGACCGTGATAGTAAAATGCATAGAGTCAGCAAAGGTGCACCAGAGCAGATCCTCAATCTTGCGCACAATAAGTCAGACATTGAACGCAGAGTTCATGCAGTGATAGATAAGTTTGCAGAGCGTGGTTTACGATCTCTTGCTGTAGCATACCAGGAAGTTCCAGAAGGAAGCAAAGAGAGTGCCGGAGGCCCATGGCAGTTTATTGGTCTTATGCCTCTCTTTGACCCACCTAGGCATGACAGTGCAGAAACAATAAGGAGGGCACTTAACCTAGGAGTCAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGCCGTCGCTTGGGAATGGGCACCAACATGTATCCCTCGTCTGCATTGCTTGGCCAAGATAAGGATGAATCTATTTCTGCCTTACCCATTGATGAACTGATAGAAAAAGCTGATGGATTTGCTGGCGTTTTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCTAGGAAACATATCTGTGGAATGACTGGTGATGGAGTAAACGATGCGCCTGCACTTAAAAAGGCAGACATTGGTATAGCTGTTGCTGATGCAACTGATGCAGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATTAGTGCTGTTTTGACCAGCCGGGCTATCTTCCAGAGAATGAAAAATTACACAATTTATGCAGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGCTGGCGCTCATATGGAAGTTTGACTTTCCACCTTTTATGGTGCTCATCATTGCCATCCTAAATGATGGTACTATTATGACAATATCAAAAGATCGGGTAAAACCATCTCCTCTTCCCGATAGCTGGAAGCTAGCAGAGATATTTACTACTGGCATCATACTTGGAAGTTACTTGGCAATGATGACGGTGATATTCTTTTGGGCAGCATACAAAACAGATTTCTTCCCGCGAGTTTTTGGGGTCTCAACTCTTGAAAAAACTGCTCATGATGATATCCGAAAACTTGCCTCAGCAATTTATCTTCAAGTGAGCACTATCAGTCAGGCCCTTATATTTGTAACTCGGTCTCGAGGGTGGTCATATGTTGAGCGTCCTGGTATATTGCTGGTGACTGCTTTTGTGGTTGCTCAACTGATTGCCACTTTGATTGCAGTCTATGCAAACTGGAGCTTCGCTGCAATTGAAGGAATTGGTTGGGGCTGGGCGGGAGTAATATGGTTATATAACTTAATATTCTACATCCCACTTGATGTCATTAAGTTTTTTATTCGCTATGCTTTGAGTGGGAGGGCTTGGGATCTTGTCATTGAGCAAAGGACTGCATTCACAAGGCAAAAGGACTTTGGGAAGGAACAACGGGAACTTCAATGGGCACATGCTCAAAGAACTTTGCATGGATTACAGCCACCTGACACCAAGAAGTTCACTGAGCGCACTCATTTCAACGAACTCAATCAAATGGCTGAGGAAGCTAAAAGGAGAGCTGAAATTGCAAGGCTGAGAGAATTGCATACGCTAAAAGGTCATGTAGAATCAGTTGTGAAATTGAAGGGGCTTGACATAGACACAATTCAGCAAGCATATACAGTCTGA 2988 0.4401 MGDKSQVLEAVLKEAVDLVIDLNHWKPFLVAICSSLPWSVLFIDWSLGFCLVFLKMQENIPIEEVLENLRCSREGLTSVAAEERLTIFGHNKLEEKKDSKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWNEQDASVLVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQDRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDPDTVVLMAAQASRLENQDAIDSAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDRDSKMHRVSKGAPEQILNLAHNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPEGSKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESISALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGSYLAMMTVIFFWAAYKTDFFPRVFGVSTLEKTAHDDIRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGILLVTAFVVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNLIFYIPLDVIKFFIRYALSGRAWDLVIEQRTAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKKFTERTHFNELNQMAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIDTIQQAYTV 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1197 995 Pfam haloacid dehalogenase-like hydrolase 366 643 - -
Glsi13g1197 995 NCBIfam HAD-IC family P-type ATPase 142 406 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1197 995 NCBIfam HAD-IC family P-type ATPase 604 717 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1197 995 SUPERFAMILY Calcium ATPase, transduction domain A 173 270 IPR008250 -
Glsi13g1197 995 FunFam Plasma membrane ATPase 382 529 - -
Glsi13g1197 995 SUPERFAMILY HAD-like 366 676 IPR036412 -
Glsi13g1197 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 892 IPR023298 -
Glsi13g1197 995 Gene3D - 382 529 IPR023299 GO:0000166
Glsi13g1197 995 Gene3D - 173 257 - -
Glsi13g1197 995 PRINTS P-type cation-transporting ATPase superfamily signature 220 234 - -
Glsi13g1197 995 PRINTS P-type cation-transporting ATPase superfamily signature 370 384 - -
Glsi13g1197 995 PRINTS P-type cation-transporting ATPase superfamily signature 546 556 - -
Glsi13g1197 995 PRINTS P-type cation-transporting ATPase superfamily signature 629 648 - -
Glsi13g1197 995 PRINTS P-type cation-transporting ATPase superfamily signature 524 535 - -
Glsi13g1197 995 PRINTS P-type cation-transporting ATPase superfamily signature 652 664 - -
Glsi13g1197 995 NCBIfam plasma-membrane proton-efflux P-type ATPase 75 851 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi13g1197 995 Gene3D - 944 995 - -
Glsi13g1197 995 Pfam Cation transporter/ATPase, N-terminus 59 122 IPR004014 -
Glsi13g1197 995 SFLD p-type atpase 352 680 IPR044492 -
Glsi13g1197 995 SMART Cation_ATPase_N_a_2 56 128 IPR004014 -
Glsi13g1197 995 PRINTS H+-transporting ATPase (proton pump) signature 486 504 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1197 995 PRINTS H+-transporting ATPase (proton pump) signature 629 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1197 995 PRINTS H+-transporting ATPase (proton pump) signature 660 685 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1197 995 PRINTS H+-transporting ATPase (proton pump) signature 805 826 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1197 995 PRINTS H+-transporting ATPase (proton pump) signature 601 617 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1197 995 Coils Coil 946 966 - -
Glsi13g1197 995 FunFam Plasma membrane ATPase 173 257 - -
Glsi13g1197 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 372 378 IPR018303 -
Glsi13g1197 995 SFLD C1.7: P-type atpase like 352 680 - -
Glsi13g1197 995 CDD P-type_ATPase_H 75 886 IPR006534 GO:0008553|GO:0016020|GO:0120029
Glsi13g1197 995 FunFam Plasma membrane ATPase 523 677 - -
Glsi13g1197 995 PANTHER CALCIUM-TRANSPORTING ATPASE 58 928 - -
Glsi13g1197 995 Gene3D - 367 666 IPR023214 -
Glsi13g1197 995 FunFam ATPase 4 plasma membrane-type 614 860 - -
Glsi13g1197 995 Gene3D - 135 860 - -
Glsi13g1197 995 Pfam E1-E2 ATPase 171 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1197 Glsi-ChrGlsi13 29462341 29468001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1197 1 995 Primary Pumps ATPases AT5G62670 89.246 0.0 1778