Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1193 ATGGAAATGGGCACCGTAGCGTGGGTTTTCTTGGTGATTTCCACAACTTTTTTCTGCCCTTCGACTCTTGCTCTCACTCAAGACGGTCTCACGTTGTTGGAAATAAAAAACACCTTGAATGACACTAGGAATGTTCTCGGCAACTGGCTAGAGTCTGATGAATCTCCCTGTAAATGGACTGGTATCGCTTGTCATCCTGGTGAACAACGAGTTCGCTCAATAAATCTGCCTTACATGCAACTCGGAGGGATTATATCTCCCAGCATTGGCAAACTCAGTAGACTGCAGAGACTGGCACTTCATCAGAACAGCTTACATGGAATTATTCCTAATGAAATTACCAATTGTACTGAGCTAAGAGCCCTGTACCTGAGGGCTAATTATTTCCAAGGAGGCATACCATCAGATATTGGTAACCTTTCCTATTTAACTATATTGGATTTATCAAGCAACTCTTTTAAGGGTGCTATACCATCATCTATTGGCCGTCTCTCACATTTGCGACTACTGAACTTATCTACCAATTTCTTTTCTGGTGAAATCCCTGATATTGGAGTACTAAGCACCTTCGGGAACAACTCGTTTATTGGGAACTTAGATCTTTGTGGGCGGCAAGTTGAAAAACCCTGTCGGACCTCACTTGGTTTCCCTGTGGTGCTACCGCATGCTGGAAGTGATGAAGCTGCAGTCCCTACCAAAAGATCTTCACGTTACATGAAGGGGCTGCTGATTGGTGTCATATCCGTCATGGGTCTTGCACTTGTCATAATGTTTTCATTCCTCTGGATTTGTTTGCTATCAAAGAAGGAAAGAGCTGTAAGCTCTTACACTGAAGTCAAGAAACAATTGCGTCCAGAATCAAGTACAAAACTTATTACTTTCCATGGTGATCTTCCATACCCATCATCTGACATAATTGAAAAGCTGGAATCTCTTGATGAAGAGGATGTAGTAGGATCAGGAGGATTTGGTACTGTCTATCGAATGATGATGAATGATGGTGGAACATTTGCTGTTAAGAAGGTTGATAGAAGTCATGATGAATCTGATCAGGTGTTTGAAAGGGAACTAGAGATCTTGGGTGGCATCAAGCACATAAATTTAGCAAGTCTGCGTGGTTACTGCAGGCTCCCTTCTTCAAAGTTTCTTATCTTTGATTATCTGGCTATTGGCAGCTTAGATGATCTATTGCACGAAAATAATGAACAACAATTATTGAATTGGGGTGCTCGTCTAAATATAGCCCTTGGTTCTGCCCGGGGGTTGGCATACTTGCACCATGAGTGCTCCCCAAAAGTTGTGCATCGGAACATAAAATCCAGCAATATCCTCCTCGATGAGAACTTGGAGCCTCGAGTGTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGACAAAGACGCCCATGTTACAACCGTAGTTGCTGGCACATTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGTAGAGCTAGTGAGAAGTCAGATGTATATAGCTTTGGAGTTTTATTGCTAGAACTTGTAACTGGGAAGAGACCTACAGATTCTTCCTTTGTGAAGAGAGGATTGAATGTTGTTGGTTGGATGAACACACTGCTGAGAGAGAACAGATTGGAAGACGTGGTAGACAGAAAATGCAGTGATGCAGATGCAGGAACTGTTGAAGTAGTTCTTGAGATGGCAGCAAGATGCACAGACGCAAGCCCAGATGAACGTCCATCAATGAATCAGGTGTTACAGTTGCTGGAACAAGAAGTTATGTCGCCTTGCCCAACCGAATTTTATGAATCCCATTCGGATCACTGA 1803 0.4287 MEMGTVAWVFLVISTTFFCPSTLALTQDGLTLLEIKNTLNDTRNVLGNWLESDESPCKWTGIACHPGEQRVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNSLHGIIPNEITNCTELRALYLRANYFQGGIPSDIGNLSYLTILDLSSNSFKGAIPSSIGRLSHLRLLNLSTNFFSGEIPDIGVLSTFGNNSFIGNLDLCGRQVEKPCRTSLGFPVVLPHAGSDEAAVPTKRSSRYMKGLLIGVISVMGLALVIMFSFLWICLLSKKERAVSSYTEVKKQLRPESSTKLITFHGDLPYPSSDIIEKLESLDEEDVVGSGGFGTVYRMMMNDGGTFAVKKVDRSHDESDQVFERELEILGGIKHINLASLRGYCRLPSSKFLIFDYLAIGSLDDLLHENNEQQLLNWGARLNIALGSARGLAYLHHECSPKVVHRNIKSSNILLDENLEPRVSDFGLAKLLVDKDAHVTTVVAGTFGYLAPEYLQSGRASEKSDVYSFGVLLLELVTGKRPTDSSFVKRGLNVVGWMNTLLRENRLEDVVDRKCSDADAGTVEVVLEMAARCTDASPDERPSMNQVLQLLEQEVMSPCPTEFYESHSDH 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1193 600 ProSiteProfiles Protein kinase domain profile. 312 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1193 600 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Glsi13g1193 600 SUPERFAMILY Protein kinase-like (PK-like) 292 582 IPR011009 -
Glsi13g1193 600 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
Glsi13g1193 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 187 - -
Glsi13g1193 600 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 582 - -
Glsi13g1193 600 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 388 593 - -
Glsi13g1193 600 ProSitePatterns Protein kinases ATP-binding region signature. 318 341 IPR017441 GO:0005524
Glsi13g1193 600 Gene3D Transferase(Phosphotransferase) domain 1 389 591 - -
Glsi13g1193 600 SUPERFAMILY L domain-like 26 209 - -
Glsi13g1193 600 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1193 600 Gene3D Phosphorylase Kinase; domain 1 273 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1193 Glsi-ChrGlsi13 29444873 29448392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1193 7 590 Receptor kinase-like Gene Family AT2G35620 48.630 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Glsi13g1193 Pkinase 1.3e-46 CL0016