Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1191 ATGAAATTTCGGACAGAAGAGGAAAGGTCTAGACCTTATGAAAGCGACCCCGGATCTTTTTACCTTACATTGTTGAGGTTGACAGTTTCTACTGCTACCTCTGTAAAGTTAGAAGAAAGCTTTTCAACCATACCCCACAGCCACTCTCATTCCCGCATTCACTCAGCCCAGTCACCACTTATAGTGAGAGCTATCAACTTGAATGAGAATGGATCTTCTCTCCAGGGTCATTTTGAGCAAATACCTATTCATTTTATGGTATTCCCTGCTAGCAAGGTAGCACCCCTCTTATATGCCTTTGTCAACGTGTATGCCGGCCAGCCAATCTCCGAACCAACCCTGGACCATGGTGGGTCAGCCAATGGTCATCTGGAGAGCTCTAGTTTGCATCTCTGTGGTTGGGATGTGGATGGTGGTAGTAATAGAAGCTTCTTCCAAAGTGGGTTCAAGATCCATGGTGTGCTTTGGAGATGCATGTCCAAGGAGGAAAGGGAGGTAATAGGTCGTTCTTTCGTCCTTTTGATCATGATGTTTCTTGAGAAAAGTTTCGAGGTGGAGAACAAGCCTGAACCAGAAAGGAAAGTTCAGCTAGCCAAGGACCTTGGCTTGCAGCCTCGGCAAGTTGCGATTTGGTATCAGAACCGACGAGCAGGATGGAAGACCAAGCAGGTGGAGAAGGATTATGAATCTCTGCAAGCTAGCTATACCAATCTTAAAGGCCAACTACGAGAAGCTCCTCAAGAACAAAGAAAAATTAAAAGCAGAGGTTTCAAACCTCAAAAGAAAGAGTGCTTTCAAGAGAGGAAGAAAAATTAA 816 0.4485 MKFRTEEERSRPYESDPGSFYLTLLRLTVSTATSVKLEESFSTIPHSHSHSRIHSAQSPLIVRAINLNENGSSLQGHFEQIPIHFMVFPASKVAPLLYAFVNVYAGQPISEPTLDHGGSANGHLESSSLHLCGWDVDGGSNRSFFQSGFKIHGVLWRCMSKEEREVIGRSFVLLIMMFLEKSFEVENKPEPERKVQLAKDLGLQPRQVAIWYQNRRAGWKTKQVEKDYESLQASYTNLKGQLREAPQEQRKIKSRGFKPQKKECFQERKKN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1191 271 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
Glsi13g1191 271 SMART HOX_1 164 226 IPR001356 GO:0003677
Glsi13g1191 271 Pfam Homeodomain 178 220 IPR001356 GO:0003677
Glsi13g1191 271 Gene3D - 175 227 - -
Glsi13g1191 271 SUPERFAMILY Homeodomain-like 177 232 IPR009057 -
Glsi13g1191 271 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 178 255 IPR045224 GO:0003700
Glsi13g1191 271 CDD homeodomain 178 223 IPR001356 GO:0003677
Glsi13g1191 271 ProSiteProfiles 'Homeobox' domain profile. 179 222 IPR001356 GO:0003677
Glsi13g1191 271 MobiDBLite consensus disorder prediction 241 271 - -
Glsi13g1191 271 MobiDBLite consensus disorder prediction 244 271 - -
Glsi13g1191 271 Coils Coil 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1191 Glsi-ChrGlsi13 29417648 29422683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1191 178 254 Homeobox Transcription Factor Family AT3G01470 59.740 6.39e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi13g1191 Homeodomain 8.4e-13 CL0123