Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1181 ATGTGCAGACACGAGGGTGTAAGAGTAATTTCGGAATCGCTTCGGAATAAAGAAGCTGGAACACTTGGTTCCGAAGCAACTACTGCACTCAGACTCCCGACACCTGCAGAGTTCACAGTAGAGCAAATTGATGGAGCTTTAGATCGTTTTCTTTTTTCTTTTTCCTTGGTTTTTCAAGCTCTCTCTTCCGTGGTACACTACCTCCTCTTTTATTCTCTATCTTGTCTTCTTCAGTGTGCTTGTCAAGAGGTTCCGCATTTGCCAGGTCCTGATCTCACAATGGGCAAGTCACCGGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCATCGAAATCAAATATTTCAAAAGGGAGAGAGAAACTTGTTAATCAGAAAGAAGCATTGGTTGTTTCCAAGGCATCAGAAACTGGTTTGGCCTTAGATCCAGCCCCCTATACTATTGCAAGAAATGAGGAAGACTTAGAACTGGAGAATAAAGCTGTAGAAAATTTTTCACCAGTGAACCAAGAAACAGATTTTGTAGGACATGTTGAACAAGATGCACAGCCCGATCCAGAGAAAATCAGGCAGGAGGAAGCTGCGACAAAGGCACAGGCTGCTTTTAGGGGTTATTTGGCTCGCAGGGCATTTAGAGCCCTAAAAGGCATAATAAGATTGCAAGCACTTATTCGTGGACACTTAGTTCGGAGACAAGCTGTTTCTACATTGTACTGTATGTATGGGATTGTCAAATTTCAAGCACTTGTTCGTGGAGGAAGAGTTAGACAGTCTGATGTTGGTTTTGAAATCCATGAGAAGTGCATTCTTTTAAAGCCTCTGGATGGAAAGAGTTCTAATCCAGTAGATATATCCACAAAAAATGCAAGGCTGTCAACAAATACTTTCACCCGGAAGCTTCTTGCTTCGTCTACTACGATATTGGCCCTGCGCCTCCAATATGTTCCTGGTGATCCAAATTCAGCCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTCACTTTTGGATACCAATTCCCCAACCCAAGAAATTTCCAGACTCTAAATCTCAGAGAAAGCAGGGTAATCTTTATATTGGAGAAGCTCAAATGGGCAAGTCAAAACGTACCAACCGGAAGCTTCCTTCTGTAAATTCTGACTCAGTCCAGGTACAAGCAAATCCTGAATTTGAGAAACCAAAACGAAATCTGAGGAAAATTCCAAGCCAATCCACAGATCCAGTGCAGGAAAATCCTCAATATGAGCTTGAAAAGGTTAAGCGTAGCCTGAGAAAGGTTCATAACCCTGTTGTTGAGAATGCTGTTCAGCCAGAAGTTGAATCTGAGACCCCAAAGCAGCATTTAGAAAAGGCAACATTTACCTCAGGTCACAATGTTTCAGAACAAGAGATTATTGGTTCTAATGAGAAGATCAATAAAGAAGCAACATTGGCCATTTCCAATGTGCCTGATGCAGAAAGTACTCCTAGACCTTCAGTTAGCAAGGAGGTGTCTGATATGCCAAGCAGTTATCCAGTGACAGTGGATTCAAAGCCCTCCACAGAGAATACAAGTAAAGATAAAATCATTTCTGATGGTGAAGCAAGAAATGAGCCCAAAGATATACTAGAGAGTAGTTATAAAGATGAAAATTCTTCCCTCACAAATGGGGATTTTAATCATAAGGAAGATCCACTAGGCAATGAAAACCAGAAACCCTCCAGGAAAGCCTCAGTTCTAGGGAAGCAGGAACGTGCAGAGAATGGTGTACAGAATAGTCCAACACTACCAAGCTATATGGCAGCAACTGAATCGGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTGGGACAAGATGGAGGTGAGAGAAACCACATTGGCCGGCGACATTCTTTGCCATCTTCAACTAACAGCAAAATGAGTTCGCATTCACCAAGGACACAGAGACCAGTTCAATCAGGTGGCAGCAAAGGGGGGCACAGAGGTGACAAGACTGTCTCATCTTCTAGAGATGGGAATGGGAAGGTAATTCAAGCAGAATGGAGGAGGTGA 2037 0.4305 MCRHEGVRVISESLRNKEAGTLGSEATTALRLPTPAEFTVEQIDGALDRFLFSFSLVFQALSSVVHYLLFYSLSCLLQCACQEVPHLPGPDLTMGKSPGKWIKTVLFGKKSSKSNISKGREKLVNQKEALVVSKASETGLALDPAPYTIARNEEDLELENKAVENFSPVNQETDFVGHVEQDAQPDPEKIRQEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVSTLYCMYGIVKFQALVRGGRVRQSDVGFEIHEKCILLKPLDGKSSNPVDISTKNARLSTNTFTRKLLASSTTILALRLQYVPGDPNSALSWLERWSASHFWIPIPQPKKFPDSKSQRKQGNLYIGEAQMGKSKRTNRKLPSVNSDSVQVQANPEFEKPKRNLRKIPSQSTDPVQENPQYELEKVKRSLRKVHNPVVENAVQPEVESETPKQHLEKATFTSGHNVSEQEIIGSNEKINKEATLAISNVPDAESTPRPSVSKEVSDMPSSYPVTVDSKPSTENTSKDKIISDGEARNEPKDILESSYKDENSSLTNGDFNHKEDPLGNENQKPSRKASVLGKQERAENGVQNSPTLPSYMAATESAKAKLRAQGSPRLGQDGGERNHIGRRHSLPSSTNSKMSSHSPRTQRPVQSGGSKGGHRGDKTVSSSRDGNGKVIQAEWRR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1181 678 MobiDBLite consensus disorder prediction 578 593 - -
Glsi13g1181 678 MobiDBLite consensus disorder prediction 625 649 - -
Glsi13g1181 678 ProSiteProfiles IQ motif profile. 192 220 IPR000048 GO:0005515
Glsi13g1181 678 MobiDBLite consensus disorder prediction 369 386 - -
Glsi13g1181 678 SMART iq_5 214 235 IPR000048 GO:0005515
Glsi13g1181 678 SMART iq_5 191 213 IPR000048 GO:0005515
Glsi13g1181 678 MobiDBLite consensus disorder prediction 481 513 - -
Glsi13g1181 678 Pfam Protein of unknown function (DUF4005) 576 652 IPR025064 -
Glsi13g1181 678 MobiDBLite consensus disorder prediction 448 466 - -
Glsi13g1181 678 MobiDBLite consensus disorder prediction 479 678 - -
Glsi13g1181 678 MobiDBLite consensus disorder prediction 514 540 - -
Glsi13g1181 678 ProSiteProfiles IQ motif profile. 216 243 IPR000048 GO:0005515
Glsi13g1181 678 Gene3D - 190 238 - -
Glsi13g1181 678 Pfam IQ calmodulin-binding motif 194 213 IPR000048 GO:0005515
Glsi13g1181 678 Pfam IQ calmodulin-binding motif 216 233 IPR000048 GO:0005515
Glsi13g1181 678 MobiDBLite consensus disorder prediction 358 411 - -
Glsi13g1181 678 MobiDBLite consensus disorder prediction 432 467 - -
Glsi13g1181 678 PANTHER IQ-DOMAIN 5-RELATED 94 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1181 Glsi-ChrGlsi13 29368500 29373499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1181 94 678 IQD Protein Family AT1G74690 44.754 7.94e-134 404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0813 02 5246173 5251585 Glsi13g1181 13 29368500 29373499 ECH
Glsi13g1181 13 29368500 29373499 Glsi13g1181 13 29368500 29373499 ECH