Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1175 ATGTCTGGCCAAAAAAGTTGCAGAGCTTCAAAATTCACAGAGAATGAGATTAATAATCTTGTCTCAAGGTTACAAACACTGCTGCCACGCCAGAACCGAAGAACCAACTCGAAGGCATCAGTGTCAATGATCTTGAAAGAAACTTGCTGTCACATAAAGAGGCTACAGAAGGAGGTGGAAGAGCTTAGTGAAAGGCTGACTGAGCTGATGGATTCCGGTGGAAGAGCTTAG 231 0.4416 MSGQKSCRASKFTENEINNLVSRLQTLLPRQNRRTNSKASVSMILKETCCHIKRLQKEVEELSERLTELMDSGGRA 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1175 76 Coils Coil 45 72 - -
Glsi13g1175 76 Gene3D - 14 73 IPR036638 GO:0046983
Glsi13g1175 76 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 70 IPR036638 GO:0046983
Glsi13g1175 76 Pfam Helix-loop-helix DNA-binding domain 16 56 IPR011598 GO:0046983
Glsi13g1175 76 PANTHER DNA BINDING PROTEIN 4 72 IPR044172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1175 Glsi-ChrGlsi13 29286977 29287485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1175 9 76 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 47.826 3.70e-15 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g1175 HLH 1.2e-06 No_clan