Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1168 ATGGAGGGAGGTGATGATCTCCACCAGCACCACCATCACCACCGTCCAAACTTTCCATTCCAACTCCTCGAGAAGAAAGAAGATCAAGAAGCTGCCTCCTGCTCTACCTCATCCACTTACCCTTCCTTAGCCATCTCCGCCGAACCCACCACTTCCAACTCAACTCGATCCAACCAGGCAGTCATACCCACCTCCTCCGAACCCTCCAACAAGAAACCGCCGCCAAAGAGAACCTCCACCAAAGACCGCCACACCAAGGTAGATGGCCGCGGCCGCCGTATTCGAATGCCCGCACTCTGCGCTGCCCGAGTCTTCCAGCTCACCCGCGAGCTCGGCCACAAGTCCGATGGCGAAACCATCGAGTGGTTACTCCAACAGGCAGAACCAGCCGTCATCGCCGCCACCGGCACCGGAACAATCCCAGCTAACTTCACCTCCCTTAACATATCTTTAAGAAGCTCTGGGTCCACCATGTCCGTCCCATCACAGCTAAGATCGTCCTACTTCAATCCCAACTTCTCAGTCCAACAGCGAAGATCAAGCTTGTTCCCCGGAATCGGGTTGTCTTCTGAGAACAGCAACACTTCGACGCTGCTGAATTTTCAGTCCAACAACTTAACCGCCACCATGTTTCAAGCGAAGCAGGAATTGCGAGACGGGGGTGCTCCGTCTTCGTCGACGACGTTGGATTTGTCAGAGACGACAGAAGAAGGCACGGGAAGGAAAAGGCGGCCGACGGAGTCAGATTTGTCGTCGACACAGCATCAAATGGGGAATTATTTGTTGCAGTCGAGTGCGGGGGCGATTCCAACGAGTCACGCGCAGATTCCGGCTAATATTTGGATGGTCACAAATTCAAATAACCAAGTTATGAGTGGTGACCCTGTATGGACATTCCCAACCCCAGTCAATAATAGCGCTTTGTATAGAGGCACCATGTCCAGTGGGTTGCATATTATGAACTTTCCCACTCCTATGGCATTGTTGCCTGGTCAGCAATTAGGCTTATCTGGGATTGGTGGTGGCGCCGGAGGTGGGAATATAAACGAAGCACATTTGAGTATGCTTGCTGGGCTTAACCCATATCGGCCGGAGTCTCATGCAAGTGGGTCCCAATCACATCCCGGTGGCGGCGATGATGGACATGATACCCCCAGTCACCGCTCATAG 1170 0.5325 MEGGDDLHQHHHHHRPNFPFQLLEKKEDQEAASCSTSSTYPSLAISAEPTTSNSTRSNQAVIPTSSEPSNKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSVQQRRSSLFPGIGLSSENSNTSTLLNFQSNNLTATMFQAKQELRDGGAPSSSTTLDLSETTEEGTGRKRRPTESDLSSTQHQMGNYLLQSSAGAIPTSHAQIPANIWMVTNSNNQVMSGDPVWTFPTPVNNSALYRGTMSSGLHIMNFPTPMALLPGQQLGLSGIGGGAGGGNINEAHLSMLAGLNPYRPESHASGSQSHPGGGDDGHDTPSHRS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1168 389 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Glsi13g1168 389 MobiDBLite consensus disorder prediction 1 31 - -
Glsi13g1168 389 MobiDBLite consensus disorder prediction 74 92 - -
Glsi13g1168 389 MobiDBLite consensus disorder prediction 360 389 - -
Glsi13g1168 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 371 IPR005333 GO:0003700
Glsi13g1168 389 MobiDBLite consensus disorder prediction 219 234 - -
Glsi13g1168 389 Pfam TCP family transcription factor 78 251 IPR017887 -
Glsi13g1168 389 MobiDBLite consensus disorder prediction 217 254 - -
Glsi13g1168 389 MobiDBLite consensus disorder prediction 1 92 - -
Glsi13g1168 389 MobiDBLite consensus disorder prediction 235 249 - -
Glsi13g1168 389 MobiDBLite consensus disorder prediction 32 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1168 Glsi-ChrGlsi13 29249776 29250945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1168 71 333 TCP Transcription Factor Family AT3G47620 45.317 5.82e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Glsi13g1168 TCP 1.3e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1168 13 29249776 29250945 Glsi13g1168 13 29249776 29250945 ECH