Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1159 ATGGGGAGGCCACCTTGCTGTGAGAAAATTGGGGTTAAGAAAGGGCCTTGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAGCATGGACCCGGGAATTGGAGATCAGTTCCCACCAACACAGGTTTGATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACAAACTATCTTCGGCCGGGTATTAAACGAGGCAACTTCACCGATCATGAAGAGAAGATGATAATCCATCTCCAAGCTCTTCTGGGCAACAGATGGGCTGCTATAGCATCCTATCTTCCGCAGAGGACAGACAATGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGCTCAAAAAGCTTCAAACTGACCATGACGTTCAATCATCTTCACAGCCAAAGGGTCAGTGGGAGAGAAGGCTTCAAACAGATATCCACACGGCCAAACAAGCCTTGTGTGAGGCTCTGTCCCTGGACAATTCAAAGCCAACCCATTATAATTTGCCTGAGACTAAGCCCTCCAATTCCAACACCACAAGAGTCTGCCAAGCATCCCCATACGCATCAAGCACTGAAAACATAGCCCGATTGCTCCAAAACTGGTTGAAGAAATCCCCAAACTCGAACTCAGCAGAAACAAGTTCAGGAAATTCCTTCAGCAACATGGTCACAAGTAGTTCTAGTGAAGGAACACAATCACAGAGCTCGGTCACGCCATATAATGCTCTGGATTCCCTATTCAGCTTCAACTCCTCCAACAACTCTGATGGCTCTCAAACTGTGTCAGTGGATGAGAATCTGTTCCAAGACGAAAGCAAGCCAAGCTTGGAGTTGGAGGGGCAGGCGCCTCTTACGTTGCTGGAGAAGTGGCTTTTTGATGATGGGGCAGCTCAAAGCCACGAAGATGAAGATCTAAATCTAATGAACTTGACACTGCAGGAAAGTACAGCCGACTTGCTTTAG 957 0.4639 MGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTDHDVQSSSQPKGQWERRLQTDIHTAKQALCEALSLDNSKPTHYNLPETKPSNSNTTRVCQASPYASSTENIARLLQNWLKKSPNSNSAETSSGNSFSNMVTSSSSEGTQSQSSVTPYNALDSLFSFNSSNNSDGSQTVSVDENLFQDESKPSLELEGQAPLTLLEKWLFDDGAAQSHEDEDLNLMNLTLQESTADLL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1159 318 Gene3D - 13 66 - -
Glsi13g1159 318 Gene3D - 68 144 - -
Glsi13g1159 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi13g1159 318 CDD SANT 16 61 IPR001005 -
Glsi13g1159 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi13g1159 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi13g1159 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Glsi13g1159 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi13g1159 318 MobiDBLite consensus disorder prediction 203 235 - -
Glsi13g1159 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi13g1159 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi13g1159 318 MobiDBLite consensus disorder prediction 160 179 - -
Glsi13g1159 318 CDD SANT 69 111 IPR001005 -
Glsi13g1159 318 FunFam MYB-related transcription factor 13 66 - -
Glsi13g1159 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi13g1159 318 SMART sant 13 63 IPR001005 -
Glsi13g1159 318 SMART sant 66 114 IPR001005 -
Glsi13g1159 318 FunFam Transcription factor MYB30 68 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1159 Glsi-ChrGlsi13 29205759 29206981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1159 1 299 MYB Transcription Factor Family AT5G62470 54.674 5.12e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1159 Myb_DNA-binding 9.6e-15 CL0123