Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1158 ATGTGGAATTCAGATAGCTGGCTGAAGGAAAAAACTGGACAAGAAATTGGTCGTGTTCAACTATGGGAGATCACACACACAAGTTCTACTGGTGAGGCTATTAATGAAGAATCACAAGAGAAACTTGTAGGAATTAAAGTTGATGTTAAGGTGAGCTATCAATATCTCAAAGACAATTCTAGGGTTAAGACTGATGCGAGGACAAGTATTTGGTCCTTCAGTGTTCATTTTAAGTTTTGTCCGGTTGTCAATGAGAGGGTGCCACATTGCGTACTGAGTAGGGTGAGGATGAAGAAGAGACAGGTGGTAGTGAAAAGAGAAGTGGCGAAGACATCATCTTCAGTGGTGAGGAACATCAGATATGGAGAGTGTCAAAAGAATCATGCAGCAAACATCGGAGGGTATGCAGTGGATGGGTGTAGGGAGTTCATGGCAAGTGGAGAGGAGGGGACAAGTGGGGCGCTTACATGTGCGGCTTGCGGCTGTCACAGGAATTTTCACAGAAGGGAAGTCCAAACTGAGGTCGTCTGTGAGTACTCTCCTCCTGATTCTGCTCGCTAG 561 0.4528 MWNSDSWLKEKTGQEIGRVQLWEITHTSSTGEAINEESQEKLVGIKVDVKVSYQYLKDNSRVKTDARTSIWSFSVHFKFCPVVNERVPHCVLSRVRMKKRQVVVKREVAKTSSSVVRNIRYGECQKNHAANIGGYAVDGCREFMASGEEGTSGALTCAACGCHRNFHRREVQTEVVCEYSPPDSAR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1158 186 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 101 174 - -
Glsi13g1158 186 Pfam ZF-HD protein dimerisation region 119 171 IPR006456 -
Glsi13g1158 186 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 121 170 IPR006456 -
Glsi13g1158 186 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 120 171 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1158 Glsi-ChrGlsi13 29188367 29194422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1158 97 184 Zinc finger-homeobox gene family AT1G18835 75.281 3.88e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi13g1158 ZF-HD_dimer 3.7e-30 No_clan