Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1156 ATGGGAGACCACCTCGTTGTGTCTGTTGATCCCCTCGTAACACCTGCAAGTTTGCAATCACTGCATGATGCCGATGCCCAATTATCATTCAATGAGAATTTCAGCTCACAAATTGCTGATATACCTACCAGTGCTATTCATGTCACTGATGTTGGGGAAAGTGATACATTGGAAGAAGAACACCTTATTCAAACAGTAGAATGTCGCATTTGCCAGGAGGAGGATAGCCTTAGCAATTTGGAGATTCCCTGTGCTTGTAACGGCACCTTGAAGTTTGCTCATAGGAGATGTGTTCAACTATGGTGCAATGAGAAGCGAGATACAATTTGTGAGATCTGCCATCAGCCATACCAACCTGGTTATACTGCTCCATCACCTCTATACCATCCTGAAGATACTTCAATTGATATAAGGCAAGTTTTAAATTCCACATTTGTGGCTGTTGGGTTGATGTCTTTTTCTTTTGTGAACTTACTGACTCATAAGCATTGCATGTTCTTGAGTTCAACTTATGTTTCTGGTATATTGCACAGTGATGGTTGGACAATCTCTAGTACTCCTTTAGATTTGCATGATCCTGGAATTTTGGCAATTGCAGCTGTGGAGCGCCATCTTCTGGAGGCTGAGCATGGTGATTATGCTTATGCCGGCATCAGTGGAACTACATTTTGCCAGTCTGTTGCTCTAATTTTAATGGCTCTATTACTTCTGAGGCATCCTGCGTCTCTCTTCAGTACTGATGTGGAGAAAGCTCTTGCCTATTTTTCTTTATTCTTGTTTCGTGCTGCTGCTTTTATTCTTCCTTGCTATCTCACGGCAAGAACCATTCGCATAATACAGAATCGGAGGCAAAGACAAACATCCTGGGGTCACAAGGTAGTTGGGGAGGAACTAAGTGATGGCAGTTTGCTCATGGGAAATGTGAACGAGTTCTATTTCTATCTGATAAACTGGACAAGAAATAGGGGAGTTGGAGTCTCAAATACACTATCCATCTCCTCTCCATTGCTTCAAAAGCAGAAGCTTTTGTTCCTCCAAATTTTCTATAGCACAAGAACAATGAGTTTCTTGACGTTCAGAGGGTTCATTCTTTTTGTTTGTATTGGGATTTTAGCTTCTCAACCATACAGGGTCTGTGGTCTGAGAAGCAAGGATCTTGCTCTGAGATTGGACAAGGGGCAGTTACCATTTGTTAAGAGTTTTCGTATCCTGAAGGCTGCTGTAATGGAGGATTTGCAATCAAAGCTGGAATTGGCACCTGCACCTTCAATGACCTTCGATCCTAATCAGTCAAACAAAAGGACAGTTCGAAAAGGTTCAGACCCAATTCACAACAGATGGTGA 1344 0.4226 MGDHLVVSVDPLVTPASLQSLHDADAQLSFNENFSSQIADIPTSAIHVTDVGESDTLEEEHLIQTVECRICQEEDSLSNLEIPCACNGTLKFAHRRCVQLWCNEKRDTICEICHQPYQPGYTAPSPLYHPEDTSIDIRQVLNSTFVAVGLMSFSFVNLLTHKHCMFLSSTYVSGILHSDGWTISSTPLDLHDPGILAIAAVERHLLEAEHGDYAYAGISGTTFCQSVALILMALLLLRHPASLFSTDVEKALAYFSLFLFRAAAFILPCYLTARTIRIIQNRRQRQTSWGHKVVGEELSDGSLLMGNVNEFYFYLINWTRNRGVGVSNTLSISSPLLQKQKLLFLQIFYSTRTMSFLTFRGFILFVCIGILASQPYRVCGLRSKDLALRLDKGQLPFVKSFRILKAAVMEDLQSKLELAPAPSMTFDPNQSNKRTVRKGSDPIHNRW 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1156 447 Pfam Protein of unknown function (DUF3675) 178 276 IPR022143 -
Glsi13g1156 447 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Glsi13g1156 447 SUPERFAMILY RING/U-box 65 118 - -
Glsi13g1156 447 CDD RING_CH-C4HC3_MARCH 68 114 - -
Glsi13g1156 447 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 286 IPR033275 -
Glsi13g1156 447 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Glsi13g1156 447 SMART ringv_2 67 114 IPR011016 GO:0008270
Glsi13g1156 447 MobiDBLite consensus disorder prediction 423 447 - -
Glsi13g1156 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1156 Glsi-ChrGlsi13 29174044 29179570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1156 67 114 C3H Transcription Factor Family AT2G37950 39.216 3.27e-06 46.2