Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1155 ATGGAAATGGAAATGGAAATCTTCAAAGCCGGCGACTCCAACCAGAAGCAGAGTGTGGAGAAGTCAGTAGAACAAGAAGGTCGGGTAAACTTGGGTCCGAAATGTTTCGCCTCCTCCCTTGACATGTTCCGTTACTTCTACAAGTTCATTCATTACTGGCCTCCTCATCTCCATGTTAACAAGTGTGTAGATCATATACTCCCGTTGCCGAAAGATATGAAACCGAAATCTGATGTGAACAAGGAATTTGGTGGCCGTGGTGGAAGAGGTTGGAATGCTAAGTATGAATTAGATGAAGATCCATTCCCACTCTCTTGCCAGTTCGCTTCGTATGACTTCAGTGGAAATGTTGATGGGTATTTTGCACCGGCTTGGCCATTCGAATCTCCCATACAAGACAGCATTCCTGATGCTATACCTTGGATGGAAAGTTTCCCTGATCCTTCATATGAAACTCTAGCCATTGAACCAACACCAAGCTTGCAAGACGATGACTTCTACGATATTCAAAAAGGACTCGCAGTTTGGAATGAAATTGATGCTGGCTTTGATTCAGATAAACCTGTTTATTTATTTTGCAAGAATGAAGATAGTGGAGAGGATATGTGGGAAGATAGGAAGGTTAAGCGATCATGCAGAGAAGAGAGAAGGAGCAGTACCAGAATGTTATCAAGGAAGACCATTTCTCAGTACTTCTATATGCCTATTACACAAGCAGCCAGGGAGCTTAATGTGGGTTTGACGCTTTTGAAGAAAAGGTGCAGGGAATTGGGAATTCGAAGGTGGCCTCATAGGAAGCTGATGAGCCTTCAAACGCTAATAAACAATGTCCAGGAGCTAGGGAAGGAGGGGGGACAGGAAAGTGAAGAAAAATTGAGGAATGCCGTTGAGATATTGGCGAAGGAAAAGAAGTTGATGGAGGAGATGCCAGATTTGCAACTTGAAGATAACACAAAAAGGCTTAGACAAGCCTGTTTTAAGGCAAACTACAAGAAGAGGAAACTAATGGGTTTAATGGAATCAAATTCTTCTAGTGGCTGTGCAATAACTTATGACACAAGAGATGAAGAACAAGACTTCAAGTATCTGTTGCCGGATTCTCATTCTTCTTACAACTTAAATGTTCTAGCAAGTTCAAATTAG 1143 0.4217 MEMEMEIFKAGDSNQKQSVEKSVEQEGRVNLGPKCFASSLDMFRYFYKFIHYWPPHLHVNKCVDHILPLPKDMKPKSDVNKEFGGRGGRGWNAKYELDEDPFPLSCQFASYDFSGNVDGYFAPAWPFESPIQDSIPDAIPWMESFPDPSYETLAIEPTPSLQDDDFYDIQKGLAVWNEIDAGFDSDKPVYLFCKNEDSGEDMWEDRKVKRSCREERRSSTRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEGGQESEEKLRNAVEILAKEKKLMEEMPDLQLEDNTKRLRQACFKANYKKRKLMGLMESNSSSGCAITYDTRDEEQDFKYLLPDSHSSYNLNVLASSN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1155 380 Coils Coil 289 309 - -
Glsi13g1155 380 ProSiteProfiles RWP-RK domain profile. 204 290 IPR003035 -
Glsi13g1155 380 Pfam RWP-RK domain 223 270 IPR003035 -
Glsi13g1155 380 PANTHER PROTEIN RKD4 85 345 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1155 Glsi-ChrGlsi13 29167324 29170597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1155 210 338 AtRKD Transcription Factor Family AT1G18790 69.697 1.19e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi13g1155 RWP-RK 7.3e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1155 13 29167324 29170597 Glsi13g1155 13 29167324 29170597 ECH