Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1148 ATGGATGAGGATAAGATAAGCTGTGGGGGAGTGCTAAGAAATTCAAGGGGATGGATAGTTAGATTGTCAAAGGTGCTAGAAACAGGTGATGCCCTGCAAGCTGAATTTGAAGATATAGCCACTGCTTTGAAAATACTAAAGAGAAGAGAGAAAGACGAGTACTTTTGGTCTGACCTTTTATGCATCTGTGAATCCCCACCCCCAGGGGTTAGCAAGATGGTAGTCGAGGATGTTCAAGGTGAACTGCGTCCTGTTTGTGATGGAAGAAAACGTGGCAAACAGAACCAGAATGAAACAGAGGAAGCTTTCCTGGTAGAGAAGCTCTTTGTAAACGCTGCCAACAATTCGTCTCTCAGAATCTCACGGTCCATTTTAACCGCACCATTCCTTTATCGTGAGCAAAATTTCACCTTGGCTGGTTCCCCAAATTCTATCCACCGAAATCGCAGCTACACCCATCGTGCAATTTTTGTTACCTCTTATCCATCTCTCTGTACTTTTCCTGACCTCTTCATCTGTTTTCAAAACTCCCACTCTGTTTCCTTGTCTTCTACCTCTGCTTTCGGTGCGGTTTTCTTTGATGTGATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAACCGACAAGTGACTTATTCGAAGCGGAAAAGTGGCATAATTAAGAAAGCCAAGGAATTATCAATATTATGTGATATAGACATTGCCCTTCTTATGTTTTCCCCAACAGGAAAGCCTACATTATTACAAGGAGAGCGCAGCAACATTGAGGAGGTCATTGAAAAGTTTGCTCAACTAAGCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCACTGAAGAAAACCTTCAAGAAATTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAACAAGTGGAGGAATTAACTCATCAAGTGAGGGTACTACAAGCGCAGCTTACAGAAGTGCATCAGAGACTGAGCTATTGGAGTAATCTAGAGAAGCTCGATAATGTAGAACATCTTAGGCAAATGGAAGACTCGCTGAGGGAGTCAATCAATCGAATACGTCTACAGAAGGAAAATTTGGGAAAACACCAACTAGTTTCATTTGAATGTTCTAACCAGTTACAGGAAGGGATGCATTTACCCCTGATGATGGCTGGTCTGCAAGAAACCCAACCCCTGTCTTGGCTTTTGAATAATGATAATAATCAGTTGATTTTACCTAGTGAGCCAAAATTTCTGCCATTTAGTGGTAATCCCAATAGAGATGGCGAGTGCTCCACTAACGTTTCACTACCAGGCTATTCTGTTTATATTAGCAATAGCAAACTTGAGGTTGGCAACTCACCCCAAGTTGCTACTTTGGGTCAGGGTGGTGGTACCTTGAATGAGTTCAATGAAACTGCTTGTTTAAATGCACAACACTGTGAGCAGTTTGCTTACCCTCCTCCACCGGTTAATGATGAAGTGAAGCATCATCTGGCTATGAACAGTAAACCAAACCTTGAGGATTATCAAGTTAATGGCAACTTTGATCTACCTAGATCACTGTTTGAAAATGGACATCAGTTCTGGAATTCTGCTCCTGGGCCATGTGGCATTGCCATGTATAACGAGAATGGCTACCATCAGTAA 1650 0.4182 MDEDKISCGGVLRNSRGWIVRLSKVLETGDALQAEFEDIATALKILKRREKDEYFWSDLLCICESPPPGVSKMVVEDVQGELRPVCDGRKRGKQNQNETEEAFLVEKLFVNAANNSSLRISRSILTAPFLYREQNFTLAGSPNSIHRNRSYTHRAIFVTSYPSLCTFPDLFICFQNSHSVSLSSTSAFGAVFFDVMGRVKLKIKKLESISNRQVTYSKRKSGIIKKAKELSILCDIDIALLMFSPTGKPTLLQGERSNIEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHQVRVLQAQLTEVHQRLSYWSNLEKLDNVEHLRQMEDSLRESINRIRLQKENLGKHQLVSFECSNQLQEGMHLPLMMAGLQETQPLSWLLNNDNNQLILPSEPKFLPFSGNPNRDGECSTNVSLPGYSVYISNSKLEVGNSPQVATLGQGGGTLNEFNETACLNAQHCEQFAYPPPPVNDEVKHHLAMNSKPNLEDYQVNGNFDLPRSLFENGHQFWNSAPGPCGIAMYNENGYHQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1148 549 Coils Coil 272 292 - -
Glsi13g1148 549 FunFam Agamous-like MADS-box protein AGL30 209 291 - -
Glsi13g1148 549 SUPERFAMILY SRF-like 197 290 IPR036879 GO:0003677|GO:0046983
Glsi13g1148 549 Coils Coil 345 365 - -
Glsi13g1148 549 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 206 250 IPR002100 GO:0003677|GO:0046983
Glsi13g1148 549 ProSiteProfiles MADS-box domain profile. 196 248 IPR002100 GO:0003677|GO:0046983
Glsi13g1148 549 PANTHER SERUM RESPONSE FACTOR HOMOLOG 198 391 - -
Glsi13g1148 549 Coils Coil 309 329 - -
Glsi13g1148 549 Gene3D - 209 291 IPR036879 GO:0003677|GO:0046983
Glsi13g1148 549 SMART madsneu2 196 255 IPR002100 GO:0003677|GO:0046983
Glsi13g1148 549 PRINTS MADS domain signature 198 218 IPR002100 GO:0003677|GO:0046983
Glsi13g1148 549 PRINTS MADS domain signature 218 233 IPR002100 GO:0003677|GO:0046983
Glsi13g1148 549 PRINTS MADS domain signature 233 254 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1148 Glsi-ChrGlsi13 29128675 29135445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1148 196 519 Type I MADS-box Gene Family AT2G03060 43.380 3.46e-83 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi13g1148 SRF-TF 3.3e-20 No_clan