Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1146 ATGAGCAAATGCTTAGCTCTAAAATGGATTTCCCGGTTATGTCCCTCTGTTAGTTTCTCAAGGTATAGAGAAGCAGAATCTGCGATGAATATTGATTTCATGAGCAGGCCCATCATCCTTTCGGAGAAAGTGAGTTCAGTGGATCGCAGTTCGAAAATATCATGCAATTTGTCTATACGAGTATGTGAATCTATGCAAAACCCTCCAACGCAAAGATCAACAAATTTAAGGATTATTTTGAGATGCATGGAACCGAACGATGATGTTCAGGAACAGCAGAACGATGGGATGAATCGAAGCCAAATAAGTGGGCTTCAACGGGTGACGAATCTGGAAAATCCCCATTGCTTTACCCCGAAGGGCGAGAAAATGGAGGATTTGGTTCTGAATAGCTACAATTTTTCCGACATTGGGAACATAGCAAATGGAATTGAAATGTTCGTTGGTTGGGGTGCTCAAAATTGTTGTGAGTTCGTTAAACCCGTAAGGACAGCAGTTCATTCATTTCCCTCTGCAATTGCTTGCTTTGCCTTTAGGATTACGTATAGTGCTTATCCAGTCAATGTACATCACAAAAAGCGTCTAAATTCACGGCCAGTGACTGGGATTACCAGTTTATGTCGAGCAATGTCTCTCCATCAAGTACTACTCTCTAAGATGGCGCTTTTGGGGATTCTCTTTGTGGGAATTCTGTGTGTGGAATCATGTGCTTATGCGTATGGTGATGGGTGGATGGATGCCCATGCAACCTTCTACGGAGGGGGTGATGCCTCTGGTACAATGGGTGGAGCTTGTGGATATGGAAACCTATATACCCAGGGCTATGGGACTAACACGGCTGCATTGAGTACGGCCTTGTTCAACAATGGTTTGAGCTGCGGGGCTTGTTTTGAGATTAGGTGTGTGAATGACCAAAGGTGGTGCCTGCCGTCCTCCATTGTGGTCACAGCTACTAACTTCTGCCCACCAAACAATGCCCTCCCTAATAATGCAGGTGGCTGGTGCAACCCTCCCCTTCATCATTTTGATCTCTCTCAGCCTGTCTTCCAGCAAATTGCTCAATACAGAGCAGGCATAGTACCCGTAGCTTACAGAAGGGTTCCATGCCAAAAGAGAGGAGGCATCAGATTCACCATTAATGGCCATTCTTACTTCAACCTAGTCCTAATCACAAACGTTGGTGGGGCTGGTGATGTTCATGCAGTATCCATCAAAGGGTCAAGAACGAATTGGCAACCAATGTCCAGGAACTGGGGTCAGAACTGGCAAAGCAACACCTACCTTAATGGACAAAGCCTGTCCTTTAAGGTTACCAGCAGCGATGGGCGAAGCGTGATGTCTTACAATGTTGTCCCTGCTGGCTGGTCCTTTGGCCAGACCTTCGCAGGCCATCAATTCCCATGA 1404 0.4601 MSKCLALKWISRLCPSVSFSRYREAESAMNIDFMSRPIILSEKVSSVDRSSKISCNLSIRVCESMQNPPTQRSTNLRIILRCMEPNDDVQEQQNDGMNRSQISGLQRVTNLENPHCFTPKGEKMEDLVLNSYNFSDIGNIANGIEMFVGWGAQNCCEFVKPVRTAVHSFPSAIACFAFRITYSAYPVNVHHKKRLNSRPVTGITSLCRAMSLHQVLLSKMALLGILFVGILCVESCAYAYGDGWMDAHATFYGGGDASGTMGGACGYGNLYTQGYGTNTAALSTALFNNGLSCGACFEIRCVNDQRWCLPSSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQYRAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTSSDGRSVMSYNVVPAGWSFGQTFAGHQFP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1146 467 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 262 374 IPR007112 -
Glsi13g1146 467 Pfam Expansin C-terminal domain 375 452 IPR007117 -
Glsi13g1146 467 FunFam Expansin 374 466 - -
Glsi13g1146 467 SMART dpbb_1 279 364 IPR007112 -
Glsi13g1146 467 SUPERFAMILY Barwin-like endoglucanases 243 392 IPR036908 -
Glsi13g1146 467 Pfam Lytic transglycolase 279 364 IPR009009 -
Glsi13g1146 467 Gene3D - 230 370 IPR036908 -
Glsi13g1146 467 PRINTS Expansin/Lol pI family signature 283 301 IPR007118 GO:0005576
Glsi13g1146 467 PRINTS Expansin/Lol pI family signature 411 425 IPR007118 GO:0005576
Glsi13g1146 467 PRINTS Expansin/Lol pI family signature 449 463 IPR007118 GO:0005576
Glsi13g1146 467 PRINTS Expansin/Lol pI family signature 243 258 IPR007118 GO:0005576
Glsi13g1146 467 PRINTS Expansin/Lol pI family signature 357 373 IPR007118 GO:0005576
Glsi13g1146 467 PRINTS Expansin/Lol pI family signature 261 279 IPR007118 GO:0005576
Glsi13g1146 467 PANTHER EXPANSIN-A15 225 466 IPR002963 GO:0009664
Glsi13g1146 467 SUPERFAMILY PHL pollen allergen 371 462 IPR036749 -
Glsi13g1146 467 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 384 463 IPR007117 -
Glsi13g1146 467 FunFam Expansin 233 370 - -
Glsi13g1146 467 CDD DPBB_EXPA_N 243 369 - -
Glsi13g1146 467 Gene3D - 374 466 IPR036749 -
Glsi13g1146 467 PRINTS Expansin signature 349 362 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 313 323 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 332 349 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 274 288 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 420 441 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 449 465 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 373 385 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 301 312 IPR002963 GO:0009664
Glsi13g1146 467 PRINTS Expansin signature 385 406 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1146 Glsi-ChrGlsi13 29118851 29126491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1146 215 466 Expansin Gene Family AT2G03090 77.381 3.93e-149 423