Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1142 ATGGAAAACGCTTTAGTGCTCTGCAAGGAAGAAGATAAGATGAATTTGCCTCCTGGATTTCGGTTTCACCCAACAGACGAAGAGCTTATAAGTCATTACTTGTACAAGAAGGTCACCGATTCAAACTTCTCTGCTAGAGCCATTGGAGAGGTGGACTTGAACAGGTCTGAGCCTTGGGATTTGCCATGGAAAGCAAAAATGGGGGAAAAAGAGTGGTACTTCTTCTGCGTGAGAGACAGAAAATACCCAACTGGTTTGAGAACCAACAGAGCTACTGAAACAGGGTACTGGAAGGCCACAGGGAAAGATAAGGAGATCTACAGGGGAAAATCGCTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGCAGAGCTCCCAAAGGAGAGAAAACCAACTGGGTCATGCACGAATACAGACTAGACGGTAAATTCTCTGTCCACAACCTCCCCAAAACTGCAAAGAATGAGTGGGTGATCTGCAGGATTTTTCAAAAGGGTTCTAGTGGTAAGAAAACCCATATTTCTGGGATGATGAGGCTGGATTCTTTAGGAAATGAATTGGGTTCTTCTGGTTTACCACCTTTGACAGATTCCTCCCCTTACATTGGCAACAAGACCAAACCCACGACAGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATCGATGTTCAAAGAAACCAAGGAGGGACCTATGATTCCTTCAACAACCACCTATTTGGGGTTTCTTCAAATCCTTTCCACACCCTCCCAAGAATCCCCCTTTCTGGTTCGTTATATTCCACTCAAGGCCTTCAAACTCCACCAAACTTGGGTTTACCCGGTTCAGTTTACAGTCTGCAGGACCAGACTGTCCTTAGAGCCTTGCTAGAAAACCATGGATCAAACACGAACGGTTTCAAACCAGAGAGGGAGATGGTCAGTGTGTCACAAGAAACGGGTCTCACTACTGATATGAACCCAGAAATCACTTCGGTCGTATCAAGTTTTGATATGGGTCGAAGGGGTTTTGACAATCAGCAGCACCCACCTTCTTCATCTGCACAAGTGGAATTCGGAAGTTTTTGGAATTACTAA 1080 0.4509 MENALVLCKEEDKMNLPPGFRFHPTDEELISHYLYKKVTDSNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATETGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLDGKFSVHNLPKTAKNEWVICRIFQKGSSGKKTHISGMMRLDSLGNELGSSGLPPLTDSSPYIGNKTKPTTESAYVPCFSNPIDVQRNQGGTYDSFNNHLFGVSSNPFHTLPRIPLSGSLYSTQGLQTPPNLGLPGSVYSLQDQTVLRALLENHGSNTNGFKPEREMVSVSQETGLTTDMNPEITSVVSSFDMGRRGFDNQQHPPSSSAQVEFGSFWNY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1142 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 244 - -
Glsi13g1142 359 MobiDBLite consensus disorder prediction 336 359 - -
Glsi13g1142 359 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Glsi13g1142 359 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Glsi13g1142 359 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Glsi13g1142 359 MobiDBLite consensus disorder prediction 340 359 - -
Glsi13g1142 359 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Glsi13g1142 359 FunFam NAC domain-containing protein 100-like 25 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1142 Glsi-ChrGlsi13 29103557 29104823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1142 14 359 NAC Transcription Factor Family AT5G07680 58.501 6.28e-135 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi13g1142 NAM 1.3e-39 No_clan