Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1131 ATGGAGATAGAGGAAATTAATTTGAACAAAGAATCTGCTGGTGCTGGAAATAATACTAAGAGTGGTGATGGATTCATTGATAGAAGCAAAGTGAGAATTTTGTTGTGCGATAACGACGCCAAGAGTTCGGAAGAGGTGTTTACGCTTCTGTTGGGGTGCTCTTATCAGGTCACTTCTGTAAGGTCAGCAAGACAAGTAATTGATGCACTGAACGCAGAGGGGCAAGATATAGATATCATACTTGCTGAAGTTGACCTTCCTACGAAGAAGGGAATGAAGATGTTAAAGTACATAGCGCGGGACAAAGAACTGCGCAGAATTCCTGTTATAATGATGTCGGCACAAGACGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCGGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTGTAGAGAAGAGCATTTTGAATTATGACTTTGATCTGGTAGCATCAGATCCTAGTGATGCTAATACGAACAGTACCACCTTGTTCTCAGATGACACAGATGACAAATCCAAGAGAAGCTCTAATCCGGAGACAGGAATGTCTATCCAACAACAGGAACATGAGTCTACTGTTTCTGCTGCTATTATTGTTGAAGAGCCTCCAGAGGCTCATGCATCAGAATACCGGCCTGATGTACCTGGAATTAGTGATCGCCGAACAGGACATTTTTCACCTGGTCCAAAGAAGAGTGAACTGAGGATTGGGGAGTCATCGGCCTTTTTAACATATGTTAAAGTAACCTCAATGAAGAGCAACTCCCAAGGAGTTGCTCATGTTAACCATAAGGCTGCTACTAATTTGAGGATGGAAGGTACACATCAAGCATGTACTCAACGGAAGGGGTTAAACGATCTTCAAATACATGAAAATGGAGAGATGTGCGAAAGCCATTCACAAGATGACTTACCCAGCAGTAATAGTTTTCATGATTCTTTCTCCATTGAAAGGTCTTCAACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAACACTTCAAGGAAGAACATTTACTTCAGGGCATGAACCATCCAAGAAATGGAACTCATGGTTCTGAGCTTGAAGTATCAGGCATGCCTGCCCAACATCCTTATCCATATTATATTTCAGGAGTTGTTAATCCCGTTATGATGCCATCATCAGCACAACTCTATCAAAAGAATCTCCAGGACCTACAGACTCATGCTAGTACAGCTATGATTGCACAGTACAATCATCTTTCCCAATGCCCTCCTCATGCAACTGGGATAACGTCCTTCCCATATTACCCAATGAGTATGTGCTTACAACCTGGACAGATGACTACAGTTCATTCATGGCCATCATTTGGAAGTTCAGGCTCATCTGACGTAAAACTAAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGTTGCTTTGATAAGAAAATTAGGTATGCCAATCGGAAACAACTTGCTGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTGTAAGTGTAGATCTTAATGGACAACCTGCTTCCATTGACTTCAATGAGGATGATGAAGAGGATGAAGAGGATCATGCAGCAAGAGATTTCTCTTGA 1677 0.4222 MEIEEINLNKESAGAGNNTKSGDGFIDRSKVRILLCDNDAKSSEEVFTLLLGCSYQVTSVRSARQVIDALNAEGQDIDIILAEVDLPTKKGMKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKSILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSSNPETGMSIQQQEHESTVSAAIIVEEPPEAHASEYRPDVPGISDRRTGHFSPGPKKSELRIGESSAFLTYVKVTSMKSNSQGVAHVNHKAATNLRMEGTHQACTQRKGLNDLQIHENGEMCESHSQDDLPSSNSFHDSFSIERSSTPPASMEVSQQKHFKEEHLLQGMNHPRNGTHGSELEVSGMPAQHPYPYYISGVVNPVMMPSSAQLYQKNLQDLQTHASTAMIAQYNHLSQCPPHATGITSFPYYPMSMCLQPGQMTTVHSWPSFGSSGSSDVKLSKVDRREAALMKFRQKRKERCFDKKIRYANRKQLAERRPRVRGQFVRKLNGVSVDLNGQPASIDFNEDDEEDEEDHAARDFS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1131 558 SUPERFAMILY CheY-like 27 156 IPR011006 -
Glsi13g1131 558 MobiDBLite consensus disorder prediction 321 346 - -
Glsi13g1131 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 238 IPR045279 GO:0009736
Glsi13g1131 558 MobiDBLite consensus disorder prediction 533 558 - -
Glsi13g1131 558 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Glsi13g1131 558 MobiDBLite consensus disorder prediction 226 255 - -
Glsi13g1131 558 MobiDBLite consensus disorder prediction 226 250 - -
Glsi13g1131 558 Pfam CCT motif 482 524 IPR010402 GO:0005515
Glsi13g1131 558 MobiDBLite consensus disorder prediction 317 346 - -
Glsi13g1131 558 MobiDBLite consensus disorder prediction 179 212 - -
Glsi13g1131 558 Gene3D - 31 233 - -
Glsi13g1131 558 SMART REC_2 31 146 IPR001789 GO:0000160
Glsi13g1131 558 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Glsi13g1131 558 ProSiteProfiles CCT domain profile. 482 524 IPR010402 GO:0005515
Glsi13g1131 558 MobiDBLite consensus disorder prediction 540 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1131 Glsi-ChrGlsi13 29063321 29067715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1131 20 543 Response Regulator Gene Family AT5G61380 49.918 2.06e-180 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Glsi13g1131 Response_reg 2.5e-17 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1131 13 29063321 29067715 Glsi13g1131 13 29063321 29067715 ECH