Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1128 ATGGCAGGGGAATCGGCTTCTTCTTCGGCTGTGCTCACCATGGACGCTCTTGACGATGTCGAGAACTACGTTTGGGCAAATGACCAAGAAGGTTTGGCATGGGACACATTCCATCATGTTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGAGAGAACCGGATGGAAGAGGCAATCAACTTTTACTCAAGAGCAAATAACATCAAATCTGGTGATCCTGTTGTCCTCAGCAATCGATGTACAGCTTATCTTAGGATGAGCAGATTTTTAAAACATAGATCTCCATCAGCCTCAGAATATAAACCATTGAGTGGACTTGATCCTACAATTCATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTCCGAAGTAATTCAGTGAAATCATACCTTTTAAAGGCTAATGCTCTTTTTCTGTTGGAGAAATATGAAAAGGTACGGGATGTTATCCTTTCAGGCCTTCAAGTTGATCCATTTAGTGATTCTCTGCGGGCTTCACTGCAAAATTTGGAAAGAGTATCAACTAGTTTGATTGGGATGAATACACATGGACAACCAGAGCGCAGTGATGACTTTGATTGCACTCTTTGCCTGAAGTTGTTTTATGAACCTGTTACAACCCCTTGTGGACATTCGTTTTGCCGTTCATGTCTATTTCAGTCAATGGATCGTGGCAACAGATGCCCATTGTGCAGGACGGTTCTTTTTATTAGTCCTAGAACGTGTTCCATTAGTGTGACATTGAAGAACATAATACAGAAGAATTTTCCCGAGGAATATGCAGAAAGGAAGCAAGAGAATGACAGTTTGACCAACTTCGGCGTAGATTTGATTCCTCTTTTTGTTATGGATGTTGTCTTACCATGTCAAAAGTTCCCACTCCATATATTTGAACCTCGGTATAGACTTATGGTCAGAAGAATAATGGAAGGAAATCATCGGATGGGAATGGTTATAATTGATTCTACAACTGGTTCCTTAGCTGAGTTTGCCTGTGAAGTTGAGATCACTGAGTGTGAGCCACTTCCGGATGGGCGGTTCTATATAGAGATTGAAAGTCACAGGAGATTTCGCATCGTCCAATCATGGGATCAAGATGGATATCGTGTTGCAGAGGTTGAATGGATACAAGATATTATGCCTTCTGCAGGGACTAGAGAGAGAGAGGATTTACTGGAATTGACTCATAATGCGGCAGAATATGCTCAATCATGGATAAAAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGACGACTTGAGAGTCTGCTGAATGTCGAAGTCATGATGCCCAAACTTCAAGACCCAGAGCGCTTCAGTTTTTGGCTTGCTTCCTTATCAAAGCGGAGGCCTCCAGAAAGATTAGATCTCCTACGCATAAGAGATACCAAAGAGAGGATTAGACGTGGCCTGATATATCTCCGAGCATAG 1443 0.4207 MAGESASSSAVLTMDALDDVENYVWANDQEGLAWDTFHHVFELVHNGNMSFRENRMEEAINFYSRANNIKSGDPVVLSNRCTAYLRMSRFLKHRSPSASEYKPLSGLDPTIHAELGLKDAEKLVDLRSNSVKSYLLKANALFLLEKYEKVRDVILSGLQVDPFSDSLRASLQNLERVSTSLIGMNTHGQPERSDDFDCTLCLKLFYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQENDSLTNFGVDLIPLFVMDVVLPCQKFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDSTTGSLAEFACEVEITECEPLPDGRFYIEIESHRRFRIVQSWDQDGYRVAEVEWIQDIMPSAGTREREDLLELTHNAAEYAQSWIKRAKEAARHDQRRLESLLNVEVMMPKLQDPERFSFWLASLSKRRPPERLDLLRIRDTKERIRRGLIYLRA 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1128 480 Pfam ATP-dependent protease La (LON) substrate-binding domain 282 478 IPR003111 -
Glsi13g1128 480 Pfam Zinc finger, C3HC4 type (RING finger) 198 235 - -
Glsi13g1128 480 SMART ring_2 198 235 IPR001841 -
Glsi13g1128 480 SUPERFAMILY TPR-like 41 171 IPR011990 GO:0005515
Glsi13g1128 480 SUPERFAMILY RING/U-box 193 261 - -
Glsi13g1128 480 Gene3D Tetratricopeptide repeat domain 38 177 IPR011990 GO:0005515
Glsi13g1128 480 Coils Coil 410 430 - -
Glsi13g1128 480 ProSitePatterns Zinc finger RING-type signature. 213 222 IPR017907 -
Glsi13g1128 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 277 IPR013083 -
Glsi13g1128 480 CDD RING-HC_LONFs_rpt2 195 239 - -
Glsi13g1128 480 Gene3D - 280 382 IPR046336 -
Glsi13g1128 480 ProSiteProfiles Zinc finger RING-type profile. 198 236 IPR001841 -
Glsi13g1128 480 SMART lon_5 281 480 IPR003111 -
Glsi13g1128 480 ProSiteProfiles Lon N-terminal domain profile. 279 480 IPR003111 -
Glsi13g1128 480 PANTHER RING FINGER PROTEIN 127 31 478 - -
Glsi13g1128 480 SUPERFAMILY PUA domain-like 282 478 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1128 Glsi-ChrGlsi13 29044172 29051332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1128 182 239 C3H Transcription Factor Family AT1G74990 36.066 1.04e-08 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1128 13 29044172 29051332 Glsi13g1128 13 29044172 29051332 ECH