Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1121 ATGTCAGAGCAGGAAACATATTCCTGGGGCTTCTTGTTTATCTGTTTCTTAATCCTTTTCTCAGGTAAACTTGTTGCCGGGGATTCTTTGGACACAGACAAAGAAGTTCTACTAAAGCTGAAATCGTACCTCAATAATCAAACTCTGGTAGACCAAGGAAGATATACAAACTGGAACACAAACAGTTCAAATCCATGTGAATGGTCAGGAATCTCGTGCAGCCTCAACGGGACGACGAGGAGGGTGGTCGGCATAGACCTCTCTGACAGTAAAATCTCCGGTGAGATATTCCAGAACTTCTCGCAGCTCACTCTCCTCACACGCCTTGATCTCTCTAAGAACACGCTCTCTGGAGCGATTCCAGAAGATTTGAGGCGGTGCCAGAAACTCGGGTATCTCAATCTCTCGAACAATATTCTTATTGGAGAGCTGAATTTGACTGGCTTGAGAAGCTTGCAAACACTGGACTTATCAGTTAATAGGCTTCATGGAGAGCTTGGATTCAATTTCCCAGCCATTTGTGACAATTTAGTCACTTTGAATATTTCTGGAAATAACTTCACTGGTAGGATTGATGAGTTCTTTGATCAGTGTGTGAAGCTACAGCACTTGGATTTGAGCACTAACAATCTGAGTGGGGGTATATGGATGGGAATTGCGAAGCTGAGAGAGTTTTCGGTTTCGGAGAACCTTCTCACTGGTCCCATTCCTTCGTCAGTTTTTCCAGCGAAATGTAACCTTGAATCACTAGACCTTTCAGAAAATGGTTTCATTGGTAAGACCCCGAAGGAGATTGCTAACTGTAAGAATTTGGTAATTCTGAATCTTTCAAGTAACAATTTTACTGGAGAAATTCCCGTTGAGTTTGGATCAATTTCGAGGCTCCAAGCATTATACTTGGGGAACAACAGTTTCTCAAGAGATATTCCAGAGACCCTTTTGAACTTGACCAATTTGGCATTCTTGGATTTAACCCGAAATCAATTTGGTGGGGAGATACAAGAGATATTTGGGAAATTTAAGCAGGTGAAGTTTCTTCTCTTGCACTCAAATTCTTATACTGGAGGATTATCTTCATCAGGAATTCTCAAATTGCCAAACATTCTACGCTTGGACCTAAGCTACAATAATTTTTCAGGTCTATTACCTCTTGAAATCTCACAAATGTCAAGTCTAAAGTATTTAATGTTAGCTTTCAATCACTTCACTGGACCTATTCCTCCCGAATTTGGAAATATGCCTCGCCTTCAAGCTCTTGACCTCTCCTTCAACAGTTTAAATGGGTCAGTCCCACCAACTTTCGGAAACTTGAGTTCTCTCCTGTGGTTGATGCTTGCAAATAATTCATTGACAGGTGAAATTCCAAGAGAGTTGGGAAACTGTTCAAGCTTGATGTGGTTAAACCTTGCAAACAATAAACTCACTGGAAAATTCCCTCCTGAATTGACAAACATAGGAAGAAATGCCATGGCCACATTTGAATCAAATCGGCAAAATGATAGGATCACTGCTGGCTCTGGTGAGTGCTTAGCAATGAAGAGATGGTTACCTGCAGATTACCCTCCATTCAGCTTTGTGTATACCATCCTCACAAGGAAGAATTGCAGAAGCATTTGGGACAGATTGGTCAAAGGTTATGGTATTTTCTCTATTTGCAGTGCTGGGTCGTTTTCTCCGATATCTCAGATCTCCGGTTATGTTCAGCTAAGTGGAAACCAGCTCGCCGGTGAACTTCCTCCAGAAATTGGGACGATGCAGAACACAAGTTTGTTGCATCTGGGGCTTAACAATTTCTCCGGGAAACTCCCTCCAGAGATGAGAAGCTTACCTCTCGTGGTATTAAACATAACCAGAAACAAGTTTTCTGGGGAAATTCCCCAGGAAATTGGGAACATGAAATGCCTGCAGATTCTGGATTTATCTAACAACAATTTTTCTGGGATTTTCCCCCCAAGCCTGAACAGCTTAACGGAGCTTAGCAAGTTCAACATCTCATACAATCCCTTAATATCGGGTCTGATTCCACCAACTGGGCAACTTGCTACTTTCGAGAAAGATTCATACTTGGGCGATCCCCTCTTGGACCTCCCAAAGTTCATCGATAACGTCACTGATGATAAAAACACGACCTTTAACAGAGACCTGAAAAAACCCACCAGGTTGTCTCTGTTTCTAGTGTTCTTAGCTCTGACACTGGCTTTCTTGGTATTTGGACTTCTTTCTCTTATAGTCTGTTTATTGGTGAAAACCCCATCAGAAGAACAACTCTTGAGGGACACGAAACACGACTATGACTCCGGCAGCTCCTCACCATGGTTGTCTGATACAGTCAAGGTTATTCGCTTGAACAAGACAGCTTTTACGCATGCTGACATTCTGAAAGCCACCGGCAACTTCTCAGACAACAGAATAATAGGAAAAGGAGGTTTTGGAACAGTGTACAGAGGAGTATTCCTGGATGGGAGAGAAGTGGCAGTGAAAAAGCTCCAAAGGGAAGGAATAGAGGGCGAAAAAGAATTCCGAGCTGAAATGGAGGTGCTGAGTGGTCATGGCTTTGGTTGGCCTCACCCAAACCTTGTCACCCTCTACGGGTGGTGCCTAGATGGTTCAGAGAAGATACTGGTTTATGAATACATAGGAGGAGGAAGCTTAGAAGATCTTGTGACCGATAGAACAAAGTTGACATGGAAGAAACGCCTGGAAGTAGCAATTGATGTGGCTCGAGCCTTGGTCTATTTACATCATGAATGCTACCCTTCTATTGTACATAGAGACGTGAAGGCGAGCAATGTGCTGCTAGATAAGGAAGGGAAGGCCAAAGTCACAGACTTTGGACTGGCTCGAGTAGTTGATGTTGGGGATAGCCATGTGAGTACGATGGTGGCTGGCACAGTAGGGTACGTTGCGCCGGAATATGGACAGACATGGCAAGCCACCACAAAAGGGGATGTGTACAGTTTTGGTGTTTTGGCTATGGAGCTAGCCACAGGGAGAAGAGCACTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGGCTAGGAGAGTCATGGGTAATGGACGACATAGGTTGAATCGATCTGTGATACCAGTTTTGCTGATGGGTTCTGGTTTGTTTGAGGGGGCAGAGGAGATGGTTGAGTTGCTACGAATTGGGGTGAAGTGCGCGGCTGAGGCACCCCAGGCTAGGCCGAGCATGAAGCAGGTTCTAGCCATGCTGATTAAGGTGTATAACCCCAAGGCAGACTCAGGTTATGGTCATCTTGTTGAGCCCTACCATGTTTAG 3282 0.4415 MSEQETYSWGFLFICFLILFSGKLVAGDSLDTDKEVLLKLKSYLNNQTLVDQGRYTNWNTNSSNPCEWSGISCSLNGTTRRVVGIDLSDSKISGEIFQNFSQLTLLTRLDLSKNTLSGAIPEDLRRCQKLGYLNLSNNILIGELNLTGLRSLQTLDLSVNRLHGELGFNFPAICDNLVTLNISGNNFTGRIDEFFDQCVKLQHLDLSTNNLSGGIWMGIAKLREFSVSENLLTGPIPSSVFPAKCNLESLDLSENGFIGKTPKEIANCKNLVILNLSSNNFTGEIPVEFGSISRLQALYLGNNSFSRDIPETLLNLTNLAFLDLTRNQFGGEIQEIFGKFKQVKFLLLHSNSYTGGLSSSGILKLPNILRLDLSYNNFSGLLPLEISQMSSLKYLMLAFNHFTGPIPPEFGNMPRLQALDLSFNSLNGSVPPTFGNLSSLLWLMLANNSLTGEIPRELGNCSSLMWLNLANNKLTGKFPPELTNIGRNAMATFESNRQNDRITAGSGECLAMKRWLPADYPPFSFVYTILTRKNCRSIWDRLVKGYGIFSICSAGSFSPISQISGYVQLSGNQLAGELPPEIGTMQNTSLLHLGLNNFSGKLPPEMRSLPLVVLNITRNKFSGEIPQEIGNMKCLQILDLSNNNFSGIFPPSLNSLTELSKFNISYNPLISGLIPPTGQLATFEKDSYLGDPLLDLPKFIDNVTDDKNTTFNRDLKKPTRLSLFLVFLALTLAFLVFGLLSLIVCLLVKTPSEEQLLRDTKHDYDSGSSSPWLSDTVKVIRLNKTAFTHADILKATGNFSDNRIIGKGGFGTVYRGVFLDGREVAVKKLQREGIEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLDGSEKILVYEYIGGGSLEDLVTDRTKLTWKKRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRALDGGEECLVEWARRVMGNGRHRLNRSVIPVLLMGSGLFEGAEEMVELLRIGVKCAAEAPQARPSMKQVLAMLIKVYNPKADSGYGHLVEPYHV 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1121 1093 SMART LRR_typ_2 292 316 IPR003591 -
Glsi13g1121 1093 SMART LRR_typ_2 103 127 IPR003591 -
Glsi13g1121 1093 SMART LRR_typ_2 149 176 IPR003591 -
Glsi13g1121 1093 SMART LRR_typ_2 365 388 IPR003591 -
Glsi13g1121 1093 SMART LRR_typ_2 413 436 IPR003591 -
Glsi13g1121 1093 SMART LRR_typ_2 389 412 IPR003591 -
Glsi13g1121 1093 SMART LRR_typ_2 632 656 IPR003591 -
Glsi13g1121 1093 SMART LRR_typ_2 437 461 IPR003591 -
Glsi13g1121 1093 PRINTS Leucine-rich repeat signature 149 162 - -
Glsi13g1121 1093 PRINTS Leucine-rich repeat signature 106 119 - -
Glsi13g1121 1093 ProSiteProfiles Leucine-rich repeat profile. 634 657 IPR001611 GO:0005515
Glsi13g1121 1093 FunFam Putative LRR receptor-like serine/threonine-protein kinase 340 501 - -
Glsi13g1121 1093 SUPERFAMILY L domain-like 255 671 - -
Glsi13g1121 1093 SUPERFAMILY Protein kinase-like (PK-like) 781 1073 IPR011009 -
Glsi13g1121 1093 Gene3D Transferase(Phosphotransferase) domain 1 880 1083 - -
Glsi13g1121 1093 Gene3D Ribonuclease Inhibitor 611 693 IPR032675 -
Glsi13g1121 1093 Gene3D Ribonuclease Inhibitor 29 170 IPR032675 -
Glsi13g1121 1093 Pfam Leucine rich repeat 414 474 IPR001611 GO:0005515
Glsi13g1121 1093 Pfam Leucine rich repeat 246 304 IPR001611 GO:0005515
Glsi13g1121 1093 ProSitePatterns Protein kinases ATP-binding region signature. 805 828 IPR017441 GO:0005524
Glsi13g1121 1093 Pfam Protein kinase domain 800 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1121 1093 Pfam Leucine Rich Repeat 635 656 IPR001611 GO:0005515
Glsi13g1121 1093 FunFam Leucine-rich repeat receptor-like protein kinase 879 1082 - -
Glsi13g1121 1093 Gene3D Phosphorylase Kinase; domain 1 768 878 - -
Glsi13g1121 1093 SMART serkin_6 799 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1121 1093 FunFam Leucine-rich repeat receptor protein kinase MSP1 762 878 - -
Glsi13g1121 1093 ProSiteProfiles Protein kinase domain profile. 799 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g1121 1093 SUPERFAMILY RNI-like 67 305 - -
Glsi13g1121 1093 Gene3D Ribonuclease Inhibitor 243 315 IPR032675 -
Glsi13g1121 1093 Gene3D Ribonuclease Inhibitor 316 609 IPR032675 -
Glsi13g1121 1093 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Glsi13g1121 1093 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 174 1072 - -
Glsi13g1121 1093 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 333 - -
Glsi13g1121 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 921 933 IPR008271 GO:0004672|GO:0006468
Glsi13g1121 1093 Gene3D Ribonuclease Inhibitor 171 242 IPR032675 -
Glsi13g1121 1093 CDD STKc_IRAK 805 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1121 Glsi-ChrGlsi13 28994116 28997661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1121 47 1075 Receptor kinase-like Gene Family AT4G39400 33.539 3.43e-158 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Glsi13g1121 Pkinase 1e-45 CL0016