LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g1116	ATGGAAAACAGGGTCAAGCAAAGAAGAGTGTCATTTTCTGATCCACCATCACAAGAAGGGGGGTCCAGTGGCTGTAAAAATGACAAGGCATGGAACTGGTTCCTTAGGCCAATTTTTTATCAGGGTGATGGAATAAGAGATGACGAGCATGGAACTGCAGTTGCAGCTGCTGCATATGCCATTCATTCGCTAGAAGAGGCAGAGTTACTTAATTTGCGGAAGATGAAAGTGGGCCCTAAAACCTCAAGGACTCAAACTATGAGAAGAAAGGAAGAAAGCATAAATAGGAGGCCAAGTTATGGGGGAACTTCTACGAAAAAGTCATTTGGACAGGACCCAAGGACTGCTGAAGGCGCTTTTCCTGTTAGACTCCCCAGTGCTATACACCCTCCAAGGCCTATATCCCCAGCAGCAGGATATAAAAAGCAGAAATGGAGTCCCATACAACACAATAATTTCAAGACCAGAGCAGAATCTTGGCAAAAGGCCAAGATAGAAAAGATTCAAAAGAGGTTTGATAAGATAAAGTTCAAAATTCTTTCCTCGGAGAGTGAGAAAAAGATGCAGGCCAAACTTCACATGGACAGGAAGAAGAGAGCATTGGAGCACAAAAGAGCAATGGCTACACAGCATTACCGGAATAAGATAGCAAGGATAACTATGATAGCACAAGGAGCAAGTGCACAGTTGGATGACAACAGAAGAAAAGAAGAGTCTAAGGCCAGAGAAAAAGCAAACAAGATTAGAAAAACTGGCATGGTTCCGGTCAAATATGCTATGCTGTTGTTGACTGGTTTTGAAACAGACCCAGAGATGGAAAAACATACATATGCAGAAGATTTTATAACTGGCAGCTCTACCAAGATCACAACCTTGATTCAAAGACTTAATGCATTGAAAGGACATCAGATGGAGTGTTTATTGCCAAACTGGAACCTGAAACAACAAAGACAAGAACAAGTCGACGGGGAAGAGAGTAGCAAATCCTCTCACGTGCACAACCAGCCGAACCTCCCTCTTGTTACCACTCATCCTGTCCCCATGTCTAATTATGAAGTTGCAGAGCTAACATGGAAAAATGGCCAGCTAGCCATGCATGGGTTTAGTGGGCTCCTACCCACTAACCAGACAAAGCCCACATGGAGTAGGGCCCACGATACGTTAGAGTCTATTGTTCAACAAGGTACATGCCAATATCAAAACTCGAATTTCATGGCACAAAGCCATACCCCAACCAGTGTTAGCTCCACTGTGGCACCCTCCTGCGGGACGGGGGCTGAGAATTCCGCCCAAGGGCAAACGGTGCCGGTGTTGACGAAGAAGCGAACACGGTCGGATTCTGACTACTGCGGCAGAAATCTTAGCAGTAACACTAAGATTGTAGAAGAATGTGATCCCAGTGCCTGTGCTAGTGCCAGTGCCACATTTTGCAGGGACAATGACACAACCATGATGACATGGGCTTCTTTTGAATCTGGTCGGAGCTTGAAGAGCAAAACTCTGGACGAAGATTCCCCTTGTCACTGTGCATCGGAAAACCGAGACCAAGATGAAGACAGAGACACCAAGGGAGAAATAGGCCGTTCCCACTCAACAAGACGCAATCGAGCTGCTGACATCCATAACCAGAGTGAGCGGAGACGAAGGGATAGAATTAATCAGAGAATGAAAGCCTTGCAGAGGTTGGTGCCTAATGCCAGTAAGACTGATAAAGCTTCAATGTTAGACGAGGTGATTGAGTACTTAAAACAACTTCAAGCACAGATCCAAATGATGAATATGAGAAACATGCCGCAGATGATGATGCCTTTAGCTATGCAGCAACAGTTTCAGATGTCTATGCTAGCCCGAATGGGTGTTGGTCTGGGCTTGGGCATGGGAATGCTTAACATGAACACCATGGCTGCTCGTGCAGCCGCTCCTCATTCTCTCCCACAACTCATTCAGCCAGCCACAGTTGGAGCTCCTGCCTCTGCTCCTACCTTTGTTGCTCCTTCCTTTATGATGCATCCTTTGTTTCAAGCTCATGCTCCGCCTGCACTTCCAAAGCCTGAGCCTGTATCAGCAGCCGCCAATGCCTCAGTTTCTTTGCCTGATCCATATGGCACTATGCTGGGACAGTCTGTTAATATGGACCTTCTCAACAGCATGGCTGCACTTTACCGGCAACAGATCAGTCAGAATAATCAGGTTAGGAGCAGCCTCGCGCAACATCATGAGAAAGGGGGCTGA	2232	0.4633	MENRVKQRRVSFSDPPSQEGGSSGCKNDKAWNWFLRPIFYQGDGIRDDEHGTAVAAAAYAIHSLEEAELLNLRKMKVGPKTSRTQTMRRKEESINRRPSYGGTSTKKSFGQDPRTAEGAFPVRLPSAIHPPRPISPAAGYKKQKWSPIQHNNFKTRAESWQKAKIEKIQKRFDKIKFKILSSESEKKMQAKLHMDRKKRALEHKRAMATQHYRNKIARITMIAQGASAQLDDNRRKEESKAREKANKIRKTGMVPVKYAMLLLTGFETDPEMEKHTYAEDFITGSSTKITTLIQRLNALKGHQMECLLPNWNLKQQRQEQVDGEESSKSSHVHNQPNLPLVTTHPVPMSNYEVAELTWKNGQLAMHGFSGLLPTNQTKPTWSRAHDTLESIVQQGTCQYQNSNFMAQSHTPTSVSSTVAPSCGTGAENSAQGQTVPVLTKKRTRSDSDYCGRNLSSNTKIVEECDPSACASASATFCRDNDTTMMTWASFESGRSLKSKTLDEDSPCHCASENRDQDEDRDTKGEIGRSHSTRRNRAADIHNQSERRRRDRINQRMKALQRLVPNASKTDKASMLDEVIEYLKQLQAQIQMMNMRNMPQMMMPLAMQQQFQMSMLARMGVGLGLGMGMLNMNTMAARAAAPHSLPQLIQPATVGAPASAPTFVAPSFMMHPLFQAHAPPALPKPEPVSAAANASVSLPDPYGTMLGQSVNMDLLNSMAALYRQQISQNNQVRSSLAQHHEKGG	743

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	497	551	-	-
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	230	246	-	-
	Glsi13g1116	743	PANTHER	TRANSCRIPTION FACTOR PIF1-RELATED	353	733	IPR031066	-
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	97	111	-	-
	Glsi13g1116	743	Pfam	Remorin, C-terminal region	153	256	IPR005516	-
	Glsi13g1116	743	FunFam	Basic helix-loop-helix transcription factor	531	594	-	-
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	78	114	-	-
	Glsi13g1116	743	SMART	finulus	542	591	IPR011598	GO:0046983
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	1	26	-	-
	Glsi13g1116	743	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	536	585	IPR011598	GO:0046983
	Glsi13g1116	743	Coils	Coil	542	562	-	-
	Glsi13g1116	743	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	540	603	IPR036638	GO:0046983
	Glsi13g1116	743	CDD	bHLH_AtPIF_like	536	598	IPR047265	-
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	227	246	-	-
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	317	340	-	-
	Glsi13g1116	743	Pfam	Helix-loop-helix DNA-binding domain	541	586	IPR011598	GO:0046983
	Glsi13g1116	743	Coils	Coil	575	595	-	-
	Glsi13g1116	743	Gene3D	-	531	596	IPR036638	GO:0046983
	Glsi13g1116	743	MobiDBLite	consensus disorder prediction	10	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g1116	Glsi-ChrGlsi13	28960211	28968332	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g1116	346	598	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G00050	42.366	3.58e-40	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Glsi13g1116		Remorin_C	6.2e-21	No_clan