Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1115 ATGGAAATTACGGAACAACAGAGAAAGCGAATCGAAGCGAATCGTTTAGCGGCCATTGCAAGACGAAAGGCACTGTTAGAATCTCGTGAACTGAAAGATCCCTGGCAGCTTTTCAAGTGCCGTAAGATTTCTTCCGAACCCAATCCCAAGCCTAGACCCATTCACTTCCCCAAACAACCCCTAACCGTCTCCGTTGATCCCGTTTCTGAGAAACCTTTGCCCCAGAAGTTCCTCGCGAGGCTCGAAATTTGCTCTCCCGACTCTTTCTCTGCCACGCCTCAGGCCCTTCAGGGTTTCCCCTATCCCGGGGAGGACCGGTGCTTGCAGAGACTAAGCGACTCTTTGTCTGATATAATGCCTTCACACTACACGCAAAATCACGGTGGTGGAAAGGCCAGTGTATATAAGTTAAGGGATTACCATGCTGTCCTTAGATGTTTGAAGATCTCCACGGACATACAAGTTGAAGAAATTCCATGGGGAACTTTAAACGTCGTCGAGACACTTTCACATTCCTTTGTTGCAGGGCGCTGGATACCCTGCAGGCCAGAGCACTTGTCTGATGACAAGGTCGACGAGTTAATTGGGAAGCTACCAAGAACTTTGTTGGATGCATTGTTGCCTTTCCAAATAGATGGTTTAAGATTTGGTTTGAGAAGGGGTGGCCGGTGTCTCATTGCAGACGAGATGGGCCTCGGGAAAACACTCCAGGCTATTGCTATTGCAGGATGTTTCTTGCATGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGTTTTACATGGGCAGAAGAAGTAGAGCGTTGGCTTCCCTTTTGCTTGCCTGCTGATATCCATTTGGTTTTTGGCCATCGAGATAATCCAGCATATTTAACTAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTCCATCGTTTGCGGAAGAGCATGCTTGAACAAGAGTGGGCTCTCTTAATTGTTGATGAATCTCATCATGTGCGATGTACAAAGAAGACCTCAGAACCTGGAGAGATAAAAGCCGTTCTTGATGTAGCCTCAAGAGTCAAGCGCATAATACTGCTATCTGGGACACCTTCTTTGTCAAGGCCTGGATTGCTTGGGAAGAATAAATATGAGTTTGCAAAAACTTATTGTGATTTCAAATATATCAAGGGCATCCGAGGCAAATATTTTGCGGATTTTTCAAAGGGCATTCGCTTAGAGGAGTTGAATGTGTTACTGAAGCAAACTGTTATGATAAGGCGTTTGAAGGAGCATGTGCTGCTACAGTTGCCACCAAAAAGGCGGCAAATTATAAGGTTGTTATTACAGAGATCAGATGTAGTTGCTGCAAAATCTGCAGTTGGGATGTTGAACAGCGACGCTTCCAAAAGTACCACTGAAGATATGCCTTTGGAAGATTTGGATGAACCTGATGGGAAGCTTTCCTACCAGGAACTTGGAATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCAGTCATTGTGGAGTCAGACAGTGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTGTATGTGAGAAAGGAATAGGTTTTATCCGAATTGATGGAAATACACTTGCCAGAGATAGGCAATCAGCAGTTGTTTCATTTCGATCAACACCAGAGGTTAAAATTGCAATTATTGGTATTCTAGCAGCAGGATTTGGACTTGATTTCTCAGCTGCACAAAATGTTGTGTTTTTGGAGCTTCCTCAGTGCCCAACTCTGATGCTTCAGGATACCTTGGATGAGTCGCATTGGAAAAATTTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGTAAATATGATGCGATGAAAGAAATACAGGTTGAAGGTGTTTCTTATCTAGACTCATCTGTCAAAACTGATAGTCATGAAGAGCAATCTGCATCCAATGAAACTTCTGAACTGGTGGCTAAGTTGCCGAATTTTGGCTCAGCATTGAAATTGCAACCTTCCCAAGCAAAATTGAATGATTCAGAAGCAAAATTGGGTGATCAATCTGATCAGCAGACTTACTTTGCTAATAAGGTTTCCTTCCTAGAATTAGGCAAGGCTTCTATTTCGGATGGAAATCTAGGTGCACATGTTTTTGATGCCAAGGAAAGATCTGATTTTGATACTTATAAGCTGGATAAGAGTGGTGAAAACAAAAATCAGACAATAGATTCTATCCAAAGGAACAGTGGTGAAGACAGTGATCAAATAAAAGAGGATAAGAAATCATCCTCAACAATAGAAGCAGATGACTACCAACCTGTTCAGGCAATTGAACCTGATGGAAATTCCTCTAGTCAAGTTGAATTTCTAAGATTTGAGGTGAGCCCATACACAGGAAGGATCCACTTGTATACTTGCATTTTGGGTACAGATATGAGACCAAGACCACTTTTTGAAAGTTTCCGACCAGAGGAACTTGAGCTGCTAAGTTCCCTTGCTGATGATGATAAAGAGAAAAGAGAATTTGTATCTTTCAAGGGAAATCCTGCTTATATGCCTACTCTTTTGGAATTTTTAAATGAGTGGAAGAAATTACGGCCAATTGACCGTAAGAAGCTACTGGGAAAACCATTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTGAGTGAAAGCAATAGCCACAACAGCAAGGGATTATTAACTGGTGGAAGTAAACGACGCATGACACCTTTAATGGATATTAGCCATCCTTTACCATCAGATGCCGTTTGGAGAAAGATTTATTTGCGAAGTGGCCATGGTAAGAGGGAGAAAGAATACAGTCAAGGTTGGACTCTGACAGATGAACCACTCTGTAAGCTTTGTCAAAAGACATGCATGGGCAACAATGCCAGGACACCTGATTATTTTGAAGATCTTTTCTGTAACCTTGTCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAGATTTCTCCGTGAGGCAAGAAATTTGATCATATTTTATGAACTTTTTAAAATTGAACAAGGCATGTGCTCAAATTGCCATTTAGACTGTCATAAATTAGTTGAACATATAAGACCTTTGTCATCGGCAAGGCGAAGAGAATACATTGAGAAAGTAGCTCCAAAAGTGGCAAAGCGAAAGAACATGCTTGAGAAGCTTGTCAACGATCCAATTGAAGGTAATGCATGGCATGCAGATCATATTGTTCCAGTATATCAAGGCGGAGTTGATATTGTGTTTGACCAAGATTATAGGTCATTGCCTAATCGGGCCAATGGAGAATGCAGACTGGAGAATATGAGGACCCTTTGTGTGGCTTGCCATTATGAAGTTACTGCAGTGCAGTGCGCTGAACGACGCAAAACAAGAGCCAAGGCCAAGAAACAACTAAAATTAGTAATGACTGAGTTAAAAATTGGTCAGATGAAGGATGCTGCAGGGTCTAATATCAAGCAACATGGGCTTCTTGAGGTGCAAGGAGATGTTATTGAGGATGAGCTTATAGTCAAAGTGCCTGGAAGTGCCTATTCTGTAGCTAATGGCTAA 3552 0.4212 MEITEQQRKRIEANRLAAIARRKALLESRELKDPWQLFKCRKISSEPNPKPRPIHFPKQPLTVSVDPVSEKPLPQKFLARLEICSPDSFSATPQALQGFPYPGEDRCLQRLSDSLSDIMPSHYTQNHGGGKASVYKLRDYHAVLRCLKISTDIQVEEIPWGTLNVVETLSHSFVAGRWIPCRPEHLSDDKVDELIGKLPRTLLDALLPFQIDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFLHEGSILVVCPAVLRFTWAEEVERWLPFCLPADIHLVFGHRDNPAYLTRCPRVVVISYTMLHRLRKSMLEQEWALLIVDESHHVRCTKKTSEPGEIKAVLDVASRVKRIILLSGTPSLSRPGLLGKNKYEFAKTYCDFKYIKGIRGKYFADFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLQRSDVVAAKSAVGMLNSDASKSTTEDMPLEDLDEPDGKLSYQELGIAKLSGFREWLSLHPVIVESDSASKMIIFAHHHKVLDGVQEFVCEKGIGFIRIDGNTLARDRQSAVVSFRSTPEVKIAIIGILAAGFGLDFSAAQNVVFLELPQCPTLMLQDTLDESHWKNLNKSLHRVSSTTDGKYDAMKEIQVEGVSYLDSSVKTDSHEEQSASNETSELVAKLPNFGSALKLQPSQAKLNDSEAKLGDQSDQQTYFANKVSFLELGKASISDGNLGAHVFDAKERSDFDTYKLDKSGENKNQTIDSIQRNSGEDSDQIKEDKKSSSTIEADDYQPVQAIEPDGNSSSQVEFLRFEVSPYTGRIHLYTCILGTDMRPRPLFESFRPEELELLSSLADDDKEKREFVSFKGNPAYMPTLLEFLNEWKKLRPIDRKKLLGKPLQLPLAVELCYLSESNSHNSKGLLTGGSKRRMTPLMDISHPLPSDAVWRKIYLRSGHGKREKEYSQGWTLTDEPLCKLCQKTCMGNNARTPDYFEDLFCNLVCYEEYRMRTSNRFLREARNLIIFYELFKIEQGMCSNCHLDCHKLVEHIRPLSSARRREYIEKVAPKVAKRKNMLEKLVNDPIEGNAWHADHIVPVYQGGVDIVFDQDYRSLPNRANGECRLENMRTLCVACHYEVTAVQCAERRKTRAKAKKQLKLVMTELKIGQMKDAAGSNIKQHGLLEVQGDVIEDELIVKVPGSAYSVANG 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1115 1183 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 379 IPR014001 -
Glsi13g1115 1183 CDD HNHc 1057 1114 IPR003615 -
Glsi13g1115 1183 MobiDBLite consensus disorder prediction 749 765 - -
Glsi13g1115 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 418 IPR027417 -
Glsi13g1115 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 633 IPR027417 -
Glsi13g1115 1183 SMART ultradead3 202 386 IPR014001 -
Glsi13g1115 1183 Gene3D - 204 370 IPR038718 -
Glsi13g1115 1183 Pfam SNF2-related domain 224 442 IPR000330 GO:0005524|GO:0140658
Glsi13g1115 1183 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1131 - -
Glsi13g1115 1183 Gene3D - 406 613 IPR027417 -
Glsi13g1115 1183 MobiDBLite consensus disorder prediction 728 781 - -
Glsi13g1115 1183 Pfam Helicase conserved C-terminal domain 504 595 IPR001650 -
Glsi13g1115 1183 CDD SF2_C_SNF 486 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1115 Glsi-ChrGlsi13 28945214 28959141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1115 506 602 RAD5 or RAD16-like Gene Family AT1G11100 32.990 5.34e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi13g1115 SNF2_N 1.3e-19 CL0023