Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1109 ATGAACTTCCAGAGTCTGTTCTTTCCATTTTCTATTTCTTATTTTTGGGTGGTATATGCTATATACTTTGTTCATAGAATAAGTCCCAATACTGCTGCTGCAGATTTCAGGCTCACCAATTTGGTTCTCTTTGAAAGTTCAGGAAATGTAGCAGACTTCTATCTTTCTGGTTTTTTGTTTCTCCCCACTGACACTGGCATTTCAGAAATGCCCAGCAAATCGGTCCGAGTTTATAGTATTTACTCTATTCTCGTTGGTTGGTCCAAAACCGCCAAAAATTTTATTCTCGTCGTACAAAGGCTCTCTGTCCTCCATCGGTGCGCTTCAGACTGTCCCTCATCACGGCGATGCAATTCACTAAACTCTAGCCCTATTTCTTGCCTGAGATCACTTCCATTCGTCCAAATGTACCCTCATCCCCATGCTTCCCTCTATTCTCAGCCACCTTATTCTTCAAATTCATACTTCTTATCTTTTCCTCAAGCAGTGCTTTCCTCTGGGTTATCGGATTCCGGTCTTCACCCCCCTTGCTCCGACGCGCTTGTAAATTCGGGCTTATACACGTCAACCCCTTCTGTTTATGGAGACCAAACAGTAAATTTTCAGCACTCGAATGCAAATACTCAGAATTGGATCGTCAAACAAGTTCACCCCATAACATATGAAGCTGCTGTCGAAACGTCAGCTGTGTCCACAAGTTTGCATTCTGCGTGGAACAGCTGGACACATCAACCTTTGCCTAATGATACCCCAGTAATTTTGCCTGACCAAACCAAAGTCAACGAACCAATGCGATGTGAGGTTTGCAAAATTGATTGTAATAGCAAGGATGTTTTTGAAAAGCACATATCAGGAAAGAAACACAAGAGGAATTTGCAGTTGCAGAATAATCCCGCCAATACAATGTTATCAGTAACCTCTCATGCTAGTTTACAAATCCAAGTGAGTAAAGTCAAAGGACAAGAGTTATTTGGTGATGTAGGCAAGGAGTTAGAGTCAAAGAAACAGAAGCTTTTGAGTGGTGGTGCAGCAGTTGATTCAGTGAGGGTTTGCACGATATGCAACATTGCTTGCAATAGTGAAGAAGTATATAGCAAACATCTAACCGGGAAAAAGCATGCTAATCAGGTTAGCTTGATGTCCAATAATGGGATTGGTCCTTATCTTGCTGCATTTAAGCGTCATGAAATTGGTCCTTGGAAAAAAGGCCAAAAGAAAATCAAGGTTGCCCAACCTGAATGGTGTGAAGTTTGCAAGATCAAGTGTAATAGCAAGGATGTATATGTCATGCACTTAGCTGGGAAGAAGCACTTAAAGAACCTTGAGAAACTCTCTAAGTCAGAAAAAGATGTTGCTGCTGCCGGTGCTACTGCAGCAATTGTAACAGCAAATGAAATGAATCCTGTAATTGGGCCACAGGAAAAGCCAGACACTTATAAAAATGAAGGGATAAATTCACAGAAATCACAGAAGGTATTCATGTTAGAGGCCCCAGAGAAGGATATTGAGGCAAAGAAACGTAAACTTGTTGAAGGTGGGGCCGCAGCAGCTTTTGTTAAATTTTGCACTCTATGCAATGTGGTGTGCAATAGCCAGACGGTCTTTGAGTCTCACCTAGTTGGGCAGAAACACGCTGCTATGGTGAAAAAACAGGCAGAGTCAACCACATGTTGA 1674 0.42 MNFQSLFFPFSISYFWVVYAIYFVHRISPNTAAADFRLTNLVLFESSGNVADFYLSGFLFLPTDTGISEMPSKSVRVYSIYSILVGWSKTAKNFILVVQRLSVLHRCASDCPSSRRCNSLNSSPISCLRSLPFVQMYPHPHASLYSQPPYSSNSYFLSFPQAVLSSGLSDSGLHPPCSDALVNSGLYTSTPSVYGDQTVNFQHSNANTQNWIVKQVHPITYEAAVETSAVSTSLHSAWNSWTHQPLPNDTPVILPDQTKVNEPMRCEVCKIDCNSKDVFEKHISGKKHKRNLQLQNNPANTMLSVTSHASLQIQVSKVKGQELFGDVGKELESKKQKLLSGGAAVDSVRVCTICNIACNSEEVYSKHLTGKKHANQVSLMSNNGIGPYLAAFKRHEIGPWKKGQKKIKVAQPEWCEVCKIKCNSKDVYVMHLAGKKHLKNLEKLSKSEKDVAAAGATAAIVTANEMNPVIGPQEKPDTYKNEGINSQKSQKVFMLEAPEKDIEAKKRKLVEGGAAAAFVKFCTLCNVVCNSQTVFESHLVGQKHAAMVKKQAESTTC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1109 557 Gene3D Classic Zinc Finger 396 444 - -
Glsi13g1109 557 Gene3D Classic Zinc Finger 496 552 - -
Glsi13g1109 557 Gene3D Classic Zinc Finger 250 296 - -
Glsi13g1109 557 Gene3D Classic Zinc Finger 328 380 - -
Glsi13g1109 557 SMART ZnF_U1_5 410 444 IPR003604 GO:0003676|GO:0008270
Glsi13g1109 557 SMART ZnF_U1_5 261 295 IPR003604 GO:0003676|GO:0008270
Glsi13g1109 557 SMART ZnF_U1_5 517 551 IPR003604 GO:0003676|GO:0008270
Glsi13g1109 557 SMART ZnF_U1_5 346 380 IPR003604 GO:0003676|GO:0008270
Glsi13g1109 557 Pfam Zinc-finger of C2H2 type 414 437 - -
Glsi13g1109 557 Pfam Zinc-finger of C2H2 type 266 288 - -
Glsi13g1109 557 Pfam Zinc-finger of C2H2 type 351 373 - -
Glsi13g1109 557 Pfam Zinc-finger of C2H2 type 521 544 - -
Glsi13g1109 557 PANTHER ZINC FINGER PROTEIN 385B-LIKE 259 382 - -
Glsi13g1109 557 SMART c2h2final6 520 544 IPR013087 -
Glsi13g1109 557 SMART c2h2final6 413 437 IPR013087 -
Glsi13g1109 557 SMART c2h2final6 349 373 IPR013087 -
Glsi13g1109 557 SMART c2h2final6 264 288 IPR013087 -
Glsi13g1109 557 SUPERFAMILY beta-beta-alpha zinc fingers 520 551 IPR036236 -
Glsi13g1109 557 SUPERFAMILY beta-beta-alpha zinc fingers 238 294 IPR036236 -
Glsi13g1109 557 SUPERFAMILY beta-beta-alpha zinc fingers 410 444 IPR036236 -
Glsi13g1109 557 SUPERFAMILY beta-beta-alpha zinc fingers 345 379 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1109 Glsi-ChrGlsi13 28905576 28912072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1109 331 548 C2H2 Transcription Factor Family AT5G61190 28.571 7.36e-19 89.0