Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1108 ATGCGGAGGCTTTTCCTTAATAGCAAGACAAAGGAAGGAATAGTTGGGAAGGCAGTTAGTTTTAGTAGGTTCCTCACCTATAGGCTGTCTTGGCTTGATGAGATCGATGATTTCAGCATTCTTGGATATTCTTTGATCAGTATCGCAGTATCATTTCCTTCGCTGATCCGTGCTCTTTTCTTGAATTGCTCGAACTCAATGGAAGAAGATCAAGTATTCAAACATGTATGTAAGTTCTGCAGCAAGAGTTTTCCTTGTGGTAGATCTTTGGGAGGTCATATGAGGTCGCACATCACCAATATTTCAGCTGAAACAGAGGAGAAACTTGCAACGAGGAAGCTTTCATCTCTCAACAATGGCGGAAGCAGCAGTAAGACTGGAGAGACGGGTTCGGAAGCAGGAACTAACGCTGGTTATGGTCTCAGAGAGAACCCAAAGAAGACTTGGAGATTTGCAGATTCAAGTGAAGAAACTTTAATCACTGACAAGTTCTGCAAGGAGTGTGGTAAAGGGTTTCACTCTTGGAAAGCTTTATTTGGTCACATGAAATGCCATTCAGATAAAGAGAGAGTTTCCAATCACTTGGAGGATCAAGATTCCTGGACTAATGGTAGCCAGAAGCTGGTCACAGACAGCCAATCTGACAACGAAGCCACTGCCCCAAATCGAAGAAGAAGATCAAAGAGAAGAACAAGGTACATGACTGCTCCTGCAACTTCGTCTTTATCTTTGGCCAATCCTTCTTCTTCTGTTTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGCAGGGACGTGGGTCATTGGGGTGGTTTGAATTCTGTTGCTGAATCCTCTGACAATAACTCTGCCTATTTCGAAGCTCGATCTTCAGTTCGAACTAATCTCGTTAGTAAAATCGAGGGCAAGACTCCAACCTCCAAGGGTTCTGATATAGCAAAACTGGCCAAACGAAGTGACAAGAAGTGGGAGACTGGTAATTCTGGTTCAGCAAATCTCAACTCGAAAGGGAAAAAAACAGAACTTTTGGCCACTGAGTTTCCCAGAAATGGTTTTAAGATGAATAAAACTAAAGTTCCTATTAGTGGGTTCACAAAGAACAGCAAAGAAAAGAAATCTGAGCTTGATTATGAGTCGGCATTGGAGGATTCTGAGGATGAGCAGGGGAAGAACGAGTTCAATGGAACAGAATTAGACTTATCAAAGTCGTCTGCTGATAAGTACACTTCAATCAAGAGAAAGTTTCTCGATTCTGAACTAAAGTCAAATCCCCAGAAGAATTGGGTAAACAAGCCTTCAGAAGCTGAATTCAGTAAGAGTTCTCTTAAGAGAGGCAAGTTCAAGTGTGCTACTTGCAACAAGATCTTCCACTCCTACCAAGCTCTGGGAGGTCATAGAGCTAGTCACAAGAAAATGAAAGGCTGCTCTGGTTCAAGAAATGAGTGCAGCGAAAACAGCATTGAAACAGACCTCTCCAACATGAAGAACAGTAACAATGGATATCTGCAGGTTGAACACAAACTGGGAGCTGGTTTTGTTAATGATGCAGACGCAGTTATAGAACCCAAGAAGAACAAAGGGCACGAGTGCCCGATTTGCCTTAAGGTTTTTCCATCTGGGCAAGCCTTGGGTGGTCATAAGAGATCTCATTTGACCGGAGGAGGGTCTGACAGTAGTAGAAACTGTCAAACAGTTGTACTTGAGGAACCAGTTCAAGAAATTAGGGAGTTTCTTGATCTTAATCTTCCTGCTGCTACAGAGGAGGAGAGCAATAGCCATGCCGAGTCTTACAGACCCTGGTGGGTAGGAGGCACCCACAAGCAGGAGGCACTGGTTGGTCTCATATCCAACTAA 1872 0.4348 MRRLFLNSKTKEGIVGKAVSFSRFLTYRLSWLDEIDDFSILGYSLISIAVSFPSLIRALFLNCSNSMEEDQVFKHVCKFCSKSFPCGRSLGGHMRSHITNISAETEEKLATRKLSSLNNGGSSSKTGETGSEAGTNAGYGLRENPKKTWRFADSSEETLITDKFCKECGKGFHSWKALFGHMKCHSDKERVSNHLEDQDSWTNGSQKLVTDSQSDNEATAPNRRRRSKRRTRYMTAPATSSLSLANPSSSVSEVEQEQEEVAMSLMMLSRDVGHWGGLNSVAESSDNNSAYFEARSSVRTNLVSKIEGKTPTSKGSDIAKLAKRSDKKWETGNSGSANLNSKGKKTELLATEFPRNGFKMNKTKVPISGFTKNSKEKKSELDYESALEDSEDEQGKNEFNGTELDLSKSSADKYTSIKRKFLDSELKSNPQKNWVNKPSEAEFSKSSLKRGKFKCATCNKIFHSYQALGGHRASHKKMKGCSGSRNECSENSIETDLSNMKNSNNGYLQVEHKLGAGFVNDADAVIEPKKNKGHECPICLKVFPSGQALGGHKRSHLTGGGSDSSRNCQTVVLEEPVQEIREFLDLNLPAATEEESNSHAESYRPWWVGGTHKQEALVGLISN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1108 623 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Glsi13g1108 623 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 233 256 - -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 360 404 - -
Glsi13g1108 623 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 195 256 - -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 371 399 - -
Glsi13g1108 623 SUPERFAMILY beta-beta-alpha zinc fingers 453 556 IPR036236 -
Glsi13g1108 623 ProSitePatterns Zinc finger C2H2 type domain signature. 455 475 IPR013087 -
Glsi13g1108 623 ProSiteProfiles Zinc finger C2H2 type domain profile. 453 480 IPR013087 -
Glsi13g1108 623 SUPERFAMILY beta-beta-alpha zinc fingers 75 185 IPR036236 -
Glsi13g1108 623 ProSitePatterns Zinc finger C2H2 type domain signature. 536 556 IPR013087 -
Glsi13g1108 623 SMART c2h2final6 75 97 IPR013087 -
Glsi13g1108 623 SMART c2h2final6 163 185 IPR013087 -
Glsi13g1108 623 SMART c2h2final6 453 475 IPR013087 -
Glsi13g1108 623 SMART c2h2final6 534 556 IPR013087 -
Glsi13g1108 623 Pfam C2H2-type zinc finger 453 477 - -
Glsi13g1108 623 Pfam C2H2-type zinc finger 165 187 - -
Glsi13g1108 623 Pfam C2H2-type zinc finger 534 557 - -
Glsi13g1108 623 Pfam C2H2-type zinc finger 75 97 - -
Glsi13g1108 623 Gene3D Classic Zinc Finger 450 556 - -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 115 133 - -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 197 217 - -
Glsi13g1108 623 ProSiteProfiles Zinc finger C2H2 type domain profile. 534 556 IPR013087 -
Glsi13g1108 623 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 115 141 - -
Glsi13g1108 623 MobiDBLite consensus disorder prediction 307 341 - -
Glsi13g1108 623 Gene3D Classic Zinc Finger 72 185 - -
Glsi13g1108 623 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 67 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1108 Glsi-ChrGlsi13 28902969 28905442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1108 529 594 C2H2 Transcription Factor Family AT1G26610 53.731 2.47e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi13g1108 zf-C2H2_6 3e-09 CL0361