Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1095 ATGGCATCGGGAAAGCGATGCCACTACGAAGTCCTCGGTCTCCAGCGAGATTGCACACCTGACGAAATCCGATCGGCTTACAAGCGGCTTGCCCTCCAACGCCACCCTGATAAGCTCGTCCAGTCCGGCTTATCTCAAGTCGAAGCCACAGCTCAGTTTCAGGAGCTCCAACATGCCTACGAGGTTCTTTCCGACCCTAAAGAGCGAGCTTGGTACGATTCTCATCGTTCTCAGATTCTCTTTTCCGATCCCAATTCAGTCGGTAACTCGATCCCTAACTCGTTCATCCCAAACTTGTTTTCCTTCTTCTCCAATAACGTTTATTCTGGGTATTCGAACTCCGGCAAGGGGTTCTATAAGGTCTATTCCGATGTTTTTGATAAAATTCATGCCAACGAAATCAATTTCGCTAAGAAACTAGGTTTAGGTATTGATGCGGTTCGACAAGCCCCTGTAATGGGCAATTTGGATAGTCCGTATGCTCAGGCGACAGCATTTTACAATTACTGGTTGGGATTTTCTACGGTGATGGATTTTTGTTGGGTGGATGAATTCAACGCGATGGCTGGTCCCACCCGGAAGTTGAGGCGTATTATGGAGGAAGAGAACAGTAAGCTCAGGAAGAAGGCGAGGAAAGAGTACAATGACACGGTGCGGAAGTTGGCGGATTTTGTCAAGAAGAGGGATAAGAGGGTGATTGACATGAAGGTAAAGAAGAATATGGAGATGGAGAAGAGGAAAGAAGAGGAGAGGGAAAGGAGGAAGCGGCTGGAGAAGGAGAAAAAGGAGAGAGCGATGGCATGTGAAGAGCCTGAGTGGGTCAAAGTCGAGGAGGATGAAGAAAATGAGGCAAACTGGCTTGAAGAGTTGGAGGAGGAGAGTAAGAGGAAGAATGCTGACAAAGAGCTTTACTGTGTACTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAACCATGAGCAATCAAAGAAGCATAAGGAGAAAGTTGCAGAATTTAGGGAAACCCTTGATTATGAAGAAGTTCTAGAGGATGTGGAAGTAGAGGTGGAAGAAGGAGGGAAGGAGAGCTTGGAAAGTGATGGGGATGATATTGGGGTGAATGATGATCAGTCAGGGGGGACTGATTATGAGATTGACAATTTGGAAGGGAGAATTAGGGACGGTCTCCATGTTGCAGAGGAGGGGACTGGAAATGAGTTTAAATTGGATGATGAAGAAGAAGATGGATTTCTTGATGCCCAGCATGAAAAAGAAAGGGAGGAGGCTGGCGTGTCAGTAGGTTTTGATGATGATGATGATGAATCGGGTGTTCTGGAAGCAATGTTGGCTGGGCATAAGAGCAGAAAAACTGGGGCTTCAAGACGCTACCCCAAGGCTTCAGTGATTACAACTCAAATTGAGAATGAAAGTAATGGGATTGGCTTTATGGAACATGTTAACCAAAAGAGTTCAAGAAAGAAACGCGGAGCCAAGAAAGAGAAGGGTAAAAAAAATTGGGAAGAATCTAAGATGACTACTATCAACGGTGATGATCAGAATAAGAGCAATATTGACAATGATAATTCTTATACCGAGGAATCTTCTTCTCAACAATATGTCGAAAATGAGACTATTGGTAAAGAGAATGAACAGGCAGGTGAAAATAAGAAGACTTCAAATCAACCTTCTGATAAAAAAGGAGCAGCAAAGGACTCGAAAACTAATGCAGGAAGTTCATCTAAACGAAAAAAAGCTAAGGTAACATCGAAGAATCTTGGCAATATTTGTGAGGTCTGTGGGGAGGAGTTTGAGTCAAGGAATAAATTACATAAGCATGTGGGTGATACCGGTCATGCGTCAATAAAATCCATAAGGAAACATCCGTAG 1872 0.4412 MASGKRCHYEVLGLQRDCTPDEIRSAYKRLALQRHPDKLVQSGLSQVEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGNSIPNSFIPNLFSFFSNNVYSGYSNSGKGFYKVYSDVFDKIHANEINFAKKLGLGIDAVRQAPVMGNLDSPYAQATAFYNYWLGFSTVMDFCWVDEFNAMAGPTRKLRRIMEEENSKLRKKARKEYNDTVRKLADFVKKRDKRVIDMKVKKNMEMEKRKEEERERRKRLEKEKKERAMACEEPEWVKVEEDEENEANWLEELEEESKRKNADKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRETLDYEEVLEDVEVEVEEGGKESLESDGDDIGVNDDQSGGTDYEIDNLEGRIRDGLHVAEEGTGNEFKLDDEEEDGFLDAQHEKEREEAGVSVGFDDDDDESGVLEAMLAGHKSRKTGASRRYPKASVITTQIENESNGIGFMEHVNQKSSRKKRGAKKEKGKKNWEESKMTTINGDDQNKSNIDNDNSYTEESSSQQYVENETIGKENEQAGENKKTSNQPSDKKGAAKDSKTNAGSSSKRKKAKVTSKNLGNICEVCGEEFESRNKLHKHVGDTGHASIKSIRKHP 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1095 623 MobiDBLite consensus disorder prediction 507 540 - -
Glsi13g1095 623 SMART ZnF_U1_5 300 334 IPR003604 GO:0003676|GO:0008270
Glsi13g1095 623 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Glsi13g1095 623 SMART c2h2final6 589 613 IPR013087 -
Glsi13g1095 623 SMART c2h2final6 303 327 IPR013087 -
Glsi13g1095 623 MobiDBLite consensus disorder prediction 603 617 - -
Glsi13g1095 623 MobiDBLite consensus disorder prediction 243 263 - -
Glsi13g1095 623 Gene3D Classic Zinc Finger 291 349 - -
Glsi13g1095 623 Gene3D DnaJ domain 1 87 IPR036869 -
Glsi13g1095 623 SUPERFAMILY beta-beta-alpha zinc fingers 297 338 IPR036236 -
Glsi13g1095 623 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Glsi13g1095 623 MobiDBLite consensus disorder prediction 542 566 - -
Glsi13g1095 623 MobiDBLite consensus disorder prediction 603 623 - -
Glsi13g1095 623 Coils Coil 233 267 - -
Glsi13g1095 623 MobiDBLite consensus disorder prediction 351 379 - -
Glsi13g1095 623 Pfam DnaJ domain 8 73 IPR001623 -
Glsi13g1095 623 ProSitePatterns Zinc finger C2H2 type domain signature. 305 327 IPR013087 -
Glsi13g1095 623 MobiDBLite consensus disorder prediction 467 586 - -
Glsi13g1095 623 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 618 IPR044648 -
Glsi13g1095 623 Pfam Zinc-finger double-stranded RNA-binding 303 328 IPR022755 -
Glsi13g1095 623 SMART dnaj_3 6 68 IPR001623 -
Glsi13g1095 623 Coils Coil 276 296 - -
Glsi13g1095 623 PRINTS DnaJ domain signature 9 27 IPR001623 -
Glsi13g1095 623 PRINTS DnaJ domain signature 27 42 IPR001623 -
Glsi13g1095 623 PRINTS DnaJ domain signature 48 68 IPR001623 -
Glsi13g1095 623 CDD DnaJ 7 65 IPR001623 -
Glsi13g1095 623 SUPERFAMILY Chaperone J-domain 4 100 IPR036869 -
Glsi13g1095 623 ProSitePatterns Zinc finger C2H2 type domain signature. 591 613 IPR013087 -
Glsi13g1095 623 ProSiteProfiles Zinc finger C2H2 type domain profile. 589 618 IPR013087 -
Glsi13g1095 623 MobiDBLite consensus disorder prediction 398 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1095 Glsi-ChrGlsi13 28795113 28797459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1095 3 618 C2H2 Transcription Factor Family AT1G74250 50.229 2.35e-175 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi13g1095 DnaJ 4.1e-21 CL0392