Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1088 ATGTTTCGCGGCCCAAACCTGGATTTAACAAAATTATTTGGAACCCTACGCAAAAACCCTCCTTGCTCTCTGTCCATCTTCATCACTCTCTGCTCCCCTTCCCGTACAACCATGGCCGCCGCAGCTCGCCCCCTGGTCACCGTGCAAGCCCTTGAAGGCGATATGGCCACAGATGCAGCCCCAACGGTTCAAATCCCTGATGTGATGAAGGCATCTATTCGACCCGACATCGTTACATTCGTTCACTCCAACATTTCCAAGAACAGCCGTCAACCTTACGCTGTCAGCAAGCGTGCTGGCCACCAGACCTCAGCCGAGTCGTGGGGTACCGGCCGTGCCGTTTCTCGTATACCCCGTGTCCCCGGCGGGGGTACCCATCGTGCTGGGCAGGGTGCCTTCGGCAACATGTGCCGTGGTGGGCGCATGTTCGCTCCCACCAAGATTTGGCGCCGATGGCACCGTAAGATCAATGTGAATCAGAAACGTTACGCCGTCGTTTCAGCCATTGCTGCTTCGGCGATCCCATCCCTTGTTCTGGCTCGCGGTCACCGGATTGAGTCCGTGCCGGAGATGCCTCTGGTCGTGAGTGATTCAGCGGAGGGAGTTGAGAAAACGAAGGATGCGATCAAGGTTCTGAAGCAGGTCGGTGCATTTCCTGATGCTGAAAAGGCAAAGGACAGCCACTCGATTCGACCTGGTAAGGGTAAGATGAGGAACCGCCGATATATTTCTCGCAAGGGTCCTCTGATTGTGTATGGAACTGAAGGAGCTAAAGCGGTCAAGGCTTTTAGGAACATACCTGGTGTTGAGGTTGCGAATGTGGATAGACTAAATCTACTGAAGCTTGCACCTGGTGGTCATCTTGGCAGGTTCGTCATTTGGACCAAGTCGGCTTTTGAGAAGCTGGATTCAATCTATGGATCGTTCGACAAGCCATCAGAGAAGAAGAAGGGTTACCTGCTCCCAAGGTCCAAGATGATCAATTCTGATTTGGCGAGGATTATCAATTCTGATGAGATTCAATCCGTCGTGAGGCCGATTAAGAAGGAAGTCAAGAGGGCACCACTGAAGAAGAATCCACTCAAGAACCTGAATGCTATGTTGAGGTTGAATCCATATGCCAAGACCGCTAAGAGGATGGCTCTTCTTGCTGAAGCTCAGCGAGTCAAGGAAAAGAAAGAGAAACTTGATAAGAAGAGAAAGTCTTTCTCCAAGGAGGAGGCTTCTGCTATTAAGGCTGCAGGGAAAGCATGGTATAACACCATGATCTCCGACAGTGATTACACTGAATTTGAGAACTTTTCAAAGTGGTTGGGTGTTTCCCAGTGA 1329 0.5109 MFRGPNLDLTKLFGTLRKNPPCSLSIFITLCSPSRTTMAAAARPLVTVQALEGDMATDAAPTVQIPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPEMPLVVSDSAEGVEKTKDAIKVLKQVGAFPDAEKAKDSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMINSDLARIINSDEIQSVVRPIKKEVKRAPLKKNPLKNLNAMLRLNPYAKTAKRMALLAEAQRVKEKKEKLDKKRKSFSKEEASAIKAAGKAWYNTMISDSDYTEFENFSKWLGVSQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1088 442 PANTHER 60S RIBOSOMAL PROTEIN L4 41 435 IPR045240 -
Glsi13g1088 442 MobiDBLite consensus disorder prediction 91 132 - -
Glsi13g1088 442 MobiDBLite consensus disorder prediction 91 110 - -
Glsi13g1088 442 Coils Coil 379 406 - -
Glsi13g1088 442 ProSitePatterns Ribosomal protein L1e signature. 157 183 IPR013000 -
Glsi13g1088 442 Pfam Ribosomal protein L4/L1 family 64 303 IPR002136 GO:0003735|GO:0005840|GO:0006412
Glsi13g1088 442 Gene3D - 40 345 IPR023574 GO:0003735|GO:0005840|GO:0006412
Glsi13g1088 442 SUPERFAMILY Ribosomal protein L4 57 304 IPR023574 GO:0003735|GO:0005840|GO:0006412
Glsi13g1088 442 FunFam 60S ribosomal protein L4 40 345 - -
Glsi13g1088 442 Pfam 60S ribosomal protein L4 C-terminal domain 317 389 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1088 Glsi-ChrGlsi13 28741318 28744667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1088 39 442 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.426 0.0 681