Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1084 ATGGAAGATGTTAATGGAGATTCGAGAATTGGTGCAGCCACAAATGTAGGTGGAGGAGAGCAATATAACTCGGCTTCGTCCTCTGCATCAGATTTGGCACCACAAGATCACTTTCAATTTCCAAGAAATGACACTTTTGGTGAAACTCATCCTTCTCCATTGGGAAATAAATTAGCCCACCCTTCGCCATCACAAAACCCCTTCCAGTTCCAGAGTGATGCAGTAAATGCTCTTGATCAAGCATTTTTAGAATCTGCATTGCATCAGCCATTCTCAATCACGAAACAAGGAAAGGTGGGCATGGAAAAGGATCAGTCCTCCACTGATGACATGTTAGGCCTCCATTCGTCATTATCACCATCCTCATATGAATCATCACCAGGAAATCCCTTCCATATGCCTACGAATACAACCAGTAAGGCCCCCGTTGGTGGATTGGATCCCTCTTTATTCTTGTCATCGCAGAATCAACAGCTAACTGATGCATCTGATAAGACCCATAGTGGTGAAACTTCTGCTAAACTTGACGAAGATGGAGGTTCTAATTATAACCGGAAATCGGGGTCGAACTCTCCATCAGCTTCAGACTGTAGCGATGATGATTTCCCTGTCAGCTCTATGCCGAAGCATGGACAACTTAGTGATGATTTGAACAATGATGGATCAGCAATACAAAATCCTCCAACGCAGGTAATGGAGCGTCCAGAGGAGCCTGGTACCCCTTCTGCATATAGGATTCCATCACATGTCTTTGATAGAACCAAATCAAACACCCCAGAGTGGAGCACTGCCTCTAATGAATCATTATTCAGCATCCACATGGGAAATATGAGTTTCTCTAGAGAATTAAATTGGTTGAGTACTGAAATAGGTAAGCCTGGTGACATGAACATGCCGGCTCCGCCTAATAATAATAATAATGATGCTTGTGCGAGTAATCAGTCCCCAGTGACTAAATTCAACGATATGAGCCTAAGAGCTGGTGACTTCCAGCAAGGTGTAGAAGTAACTGAAGCCAGAGCTGCTGAAACAATGAGAGAAGTTATAAGGGAAAACACACAGCATCATGATTTGTCATCTGTTTCTGGGTCATCGCATTTTGATGGGCCTTCTAATTTTCATGACCATTCCCACCATTCAGATGGGAGCACCAAATCTTTTGCCTTTAAAGTAATGCCAGATGGAGATAAAAGTCCTACATCAATGGCTGCCAAAGAGAAGCCAAAGCAATGCATGCAGCCAGAGACACAGACCCCTAGAGAAACGCCAAATGCAGCTCAGACCCCAAAGTCAACCACAAATTCTTCTTGTAAACAAAAGCACTGGGCGAAAGCAACTGTCTATGAATTGCATAGGAAACTTCCCTCCCATGGGCCAAAACTAAATGGCCGCGGAACAGAAACATTTCGGAACCATTTCCCGCCAGAAGCCACGTATACAAAGACACTCCGTCACTCCCTCTCTTCGCTCCTGAAATCACCTTGTTCATTATTTTTTCCATATACTCGAAATCGCCTACAGCTGCACAAGAGAATGGCGAAATCAGTGACCCCAGATGCTATTTCCATCTTGCTTGCAAACCCATCACCAGATTCTTCCTCGGAGCTTCCTGAGATCGTCGTCCAAGTCCTGGATCTCAAGCAAAGCGGTAACAGATACATGTTCACTGCGAGTGATGGAAAGTTGAAGTTAAGGACAATTCTTCCTTCAAACCAGAATTCTCAGGTCATTTCAGGAAATATTCAGAACCTGGGTCTCATTCGCATCGTTGACTATAGTCTAAACGACATCCCAAATAAGTCAGAGAAATATCTTATTGTCTCAAAATGTGAACCGTTTTCTCCTGCACTTGAAATGGAGATAAAAGCAGAAGTCAAAAGTCAGGACACCGGTATTATTTTGATTCCCAAGCAAGAGAGTGAAATCAAAAGCAAGGTGAAAAGTGAAGGATCCGGCGTTATCTTGAGACCAAAGCAAGAAATAGTGGCCAAATCTGCTGCTCAGATAGTACACGAACAACACGGAAATATGGTCCCTGCTGCACGAATGGCGATGACACGCAGGGTGCGCCCTCTCGTTTCCTTAAATCCTTATCAGGGTAATTGGACAATAAAGGTTCGCGTGACAAGCAAAGGGACCATGCGTACCTATAAGAATGCTAAAGGGGAAGGTTGTGTCTTCAACGTAGAATTGACGGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAAGCTGCAAGGAAATTTTATGAGAAATTTGTACTAGGGAAGGTTTACTACATTTCGAAGGGAACTTTAAAAGTTGCAAACAAACAGTTCAAAACCGTCCAAAATGATTATGAAATGTCATTGAATGAAAAGTCAGAGGTGGAAGAGGCAGCCGATGAAGCAAGTTTTGTTCCAGAAACAAAATTTAATTTTGTCCAGATTGATCAGCTGGGCCCTTTTGTCAATAGGAGTGACCTTGTTGATGTCATTGGAGTTGTTCAGAATGTTTCTTCAACAATGAGCATTCGTAGGAAGAGCAACAATGAGAGTGTTTCAAAGCGCGATATTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTTTGTGGAATGAGCTTGCAACTAATCTAGGGCAAGAGTTGCTGGATATTGCTGATAAATCTCCAATAGTTTCAATCAAATCCCTCAGGGTTGGTGATTTTCAAGGTGTCTCCTTATCAACTATAAGCAAAAGTGTGGTTCTAGTAAATCCTGATATATCTGAAGCAAAGAAGCTTAGAAGCTGGTATGAGTCTGAGGGAAAAGATGCTCCAATGGCCTCAGTAAGCTCTGGCTCAAGTCCCATATCCAAAAATGGAATGAGATCAGTGTACTCTGACCGTGTTTCACTTTCTCACATAACCTCGAACCTGTCCTTGGGGGAGGAGAAGCCTGCATTTTTCAGTATCAGAGCACACATAAGCTTTATCAAGCCTGACCAGACAATGTGGTACCGGGCTTGTAAGACTTGCAACAAGAAAGTCACTGAAGCCATTGGCACTGGGTATTGGTGTGAAAGCTGCCAGAAAAATGAAGAGTGCAGTTTAAGATATATTATGGTTGTAAAAGTTTCTGATGCAAGTGGAGAAGCTTTTGTCTCAGCCTTCAATGAAGAAGCCGAGACAATTGTTGGGTGTTCTGCTAATGAGCTAGATAGCCTAAAATCAGAGGAGGGAGAAGATAATCCTTATCAACTGAAATTGAAACAAGCTACTTGGACCCCTCATCTTTTCCGGGTTAGCGTTTCTCAGAACGAGTATATGAACGAGAAGAGGCAGAGGATAACAGTCCGGGCAGTTGCTCCTGTTGACTTTGCTGCTGAGTCAAGAATTCTCCTGGAAGAGATTTCAAAGATGAATGTTTGTCAATAA 3408 0.4281 MEDVNGDSRIGAATNVGGGEQYNSASSSASDLAPQDHFQFPRNDTFGETHPSPLGNKLAHPSPSQNPFQFQSDAVNALDQAFLESALHQPFSITKQGKVGMEKDQSSTDDMLGLHSSLSPSSYESSPGNPFHMPTNTTSKAPVGGLDPSLFLSSQNQQLTDASDKTHSGETSAKLDEDGGSNYNRKSGSNSPSASDCSDDDFPVSSMPKHGQLSDDLNNDGSAIQNPPTQVMERPEEPGTPSAYRIPSHVFDRTKSNTPEWSTASNESLFSIHMGNMSFSRELNWLSTEIGKPGDMNMPAPPNNNNNDACASNQSPVTKFNDMSLRAGDFQQGVEVTEARAAETMREVIRENTQHHDLSSVSGSSHFDGPSNFHDHSHHSDGSTKSFAFKVMPDGDKSPTSMAAKEKPKQCMQPETQTPRETPNAAQTPKSTTNSSCKQKHWAKATVYELHRKLPSHGPKLNGRGTETFRNHFPPEATYTKTLRHSLSSLLKSPCSLFFPYTRNRLQLHKRMAKSVTPDAISILLANPSPDSSSELPEIVVQVLDLKQSGNRYMFTASDGKLKLRTILPSNQNSQVISGNIQNLGLIRIVDYSLNDIPNKSEKYLIVSKCEPFSPALEMEIKAEVKSQDTGIILIPKQESEIKSKVKSEGSGVILRPKQEIVAKSAAQIVHEQHGNMVPAARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGTMRTYKNAKGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMSLNEKSEVEEAADEASFVPETKFNFVQIDQLGPFVNRSDLVDVIGVVQNVSSTMSIRRKSNNESVSKRDITIADETKKTVVVSLWNELATNLGQELLDIADKSPIVSIKSLRVGDFQGVSLSTISKSVVLVNPDISEAKKLRSWYESEGKDAPMASVSSGSSPISKNGMRSVYSDRVSLSHITSNLSLGEEKPAFFSIRAHISFIKPDQTMWYRACKTCNKKVTEAIGTGYWCESCQKNEECSLRYIMVVKVSDASGEAFVSAFNEEAETIVGCSANELDSLKSEEGEDNPYQLKLKQATWTPHLFRVSVSQNEYMNEKRQRITVRAVAPVDFAAESRILLEEISKMNVCQ 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1084 1135 Gene3D - 802 942 IPR012340 -
Glsi13g1084 1135 CDD RPA1_DBD_A 691 794 - -
Glsi13g1084 1135 CDD RPA1_DBD_C 963 1130 IPR047192 -
Glsi13g1084 1135 Gene3D - 688 797 IPR012340 -
Glsi13g1084 1135 Gene3D - 943 1131 IPR012340 -
Glsi13g1084 1135 SUPERFAMILY Nucleic acid-binding proteins 690 799 IPR012340 -
Glsi13g1084 1135 SUPERFAMILY Nucleic acid-binding proteins 512 615 IPR012340 -
Glsi13g1084 1135 FunFam Replication protein A subunit 688 797 - -
Glsi13g1084 1135 Pfam Replication protein A OB domain 820 916 IPR031657 -
Glsi13g1084 1135 FunFam Replication protein A subunit 515 625 - -
Glsi13g1084 1135 Pfam Replication factor-A protein 1, N-terminal domain 516 611 IPR007199 GO:0003677|GO:0005634|GO:0006260
Glsi13g1084 1135 FunFam Replication protein A subunit 945 1131 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 211 229 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 354 440 - -
Glsi13g1084 1135 NCBIfam replication factor-a protein 1 (rpa1) 514 1130 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 355 370 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 17 34 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 411 440 - -
Glsi13g1084 1135 CDD RPA1_DBD_B 824 930 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 1 72 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 110 166 - -
Glsi13g1084 1135 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 104 442 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 175 200 - -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 58 72 - -
Glsi13g1084 1135 Pfam Replication factor-A C terminal domain 979 1123 IPR013955 -
Glsi13g1084 1135 MobiDBLite consensus disorder prediction 94 262 - -
Glsi13g1084 1135 Pfam OB-fold nucleic acid binding domain 702 787 IPR004365 GO:0003676
Glsi13g1084 1135 Gene3D - 515 623 IPR012340 -
Glsi13g1084 1135 FunFam Replication protein A subunit 801 940 - -
Glsi13g1084 1135 SUPERFAMILY Nucleic acid-binding proteins 807 935 IPR012340 -
Glsi13g1084 1135 SUPERFAMILY Nucleic acid-binding proteins 958 1131 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1084 Glsi-ChrGlsi13 28710143 28716783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1084 512 1135 Core DNA Replication Machinery Family AT5G08020 67.732 0.0 899