Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1077 ATGATGACTGCAGATTCAAGAGAAGATTATGAAGCCAAGCAAGAGGGTGCTACCATTAATATTGACAAGTTCTCTAAGGAAGTACCCTCAAGACAATGGCCAGGATTCAGAAACCCCAGAATTGTGCGAGTTTCACGTTCTTTTGGAGGAAAAGATAGGCATAGCAAGGTTTGCACCATTAGGGGACTAAGAGACAGAAGGATTAGGCTTTCAGTACCCACAGCACTTCAGCTTTATGATCTTCAAGATAGACTTGGGCTAACCCAACCTAGCAAGGTCATTGATTGGTTGCTTGAAGCCACTAAATATGATATTGATAAGCTCCCACCCCTTCAAATCCCTCAGGGCTTTGCTCAGTTTCATCACCAAACCCTACTTCCTCATCATGACTCAATTGCCTTGCAATCTTCCCTTGGACCCTTGTATGATGCTCATAATTCTATAGGGAACCTCAATCTCATGACGAAGCCAAGGTTTTGGGATACTGATGCAATATCCAGACTAAAAGGTAAGGAAGATCATGAAAGAGGGTCTAACTCCGAGAAAGGAAAGTGGATCAAAACAAGTGAAGAAGGAAATGAATATGGAATTGTTGGTTGTCGCAGCCATAGCCAAGTTTCAGTTCAGAAGCTTTTCCCGAGTTGGGCTCACTCTTCTTTACCTGGCTTGCTGAACAATGCCATGGCATATAACAACCCCTACCATTCGGAACCTTCAAGCCTATCTTTATCCCAATTTGGAAGCAATGGATTATTGTTTCCTTCACAGGTAGATCCTCATCATCCAAGCAGTGGTGGGACTAGTGTGCAATTTTCATCTTCTTTGCCTGTAGTACCATCTGGCTCCCAATTACTATTTTGTCCATCTTCTGCCACTCCTTCATTTTTTACTCCTAATTATAATCCACAAAATAATGTTGCCACCTCTGCAGAAAGTCATGATCCAAGACAACTCAACCAAATTCAGTTCTTGAGCTCAAGTTCCCAGGTAGTCTTGCCACCTCATGATCCTCACATTTCATGTCTTCATCCACTCAATTCGCCCCTCATAAAACCCCTTCCATCACCTTTTAGTGCCAAGCTTCTTGATTCGGATCATAACAATGAGGAAAGTGATCGTTCTTGA 1125 0.4267 MMTADSREDYEAKQEGATINIDKFSKEVPSRQWPGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTALQLYDLQDRLGLTQPSKVIDWLLEATKYDIDKLPPLQIPQGFAQFHHQTLLPHHDSIALQSSLGPLYDAHNSIGNLNLMTKPRFWDTDAISRLKGKEDHERGSNSEKGKWIKTSEEGNEYGIVGCRSHSQVSVQKLFPSWAHSSLPGLLNNAMAYNNPYHSEPSSLSLSQFGSNGLLFPSQVDPHHPSSGGTSVQFSSSLPVVPSGSQLLFCPSSATPSFFTPNYNPQNNVATSAESHDPRQLNQIQFLSSSSQVVLPPHDPHISCLHPLNSPLIKPLPSPFSAKLLDSDHNNEESDRS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1077 374 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Glsi13g1077 374 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 327 IPR005333 GO:0003700
Glsi13g1077 374 Pfam TCP family transcription factor 50 124 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1077 Glsi-ChrGlsi13 28674336 28675460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1077 35 372 TCP Transcription Factor Family AT5G60970 38.873 7.33e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Glsi13g1077 TCP 1.1e-24 No_clan