Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1068 ATGCACAGCTCCGGAAATCAAAGGGCGCCTCTCTTGGAGAACGGTGAAAGGGGAAAGCAGGATGATCCCTCAGCGGGTCAGCTAACAGACCTTGAACATGGTGATGCACTACCGGCTGCAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAGCCTGATGCTGGGAAGTTGATACTTGCAACTTTGGCTCTGTTGGTTGCATCCACATCAAGTATCTTAATTCCAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGAGATATCCAAACTCCTGAGGATAAAGCTAAGGCTTTGGGTGCTGTCAAGGACACCATACTATATATCTTTCTGATTGTCATTGTTGGTTCAGTTTGCACAGCACTCCGAGCATGGCTATTTTCTTCTGCTAGTGAAAGGGTTGTTTCTCGGTTGAGAAAAAGGTTGTTTAGTCACCTCATACACCAGGAGATAGCCTTTTTTGATATTACGCGAACTGGGGAACTCCTAAGTAGGCTATCTGAAGATACGCAGATAATAAAGAGCGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTAGCGACTGCATTTATTGGTCTCTCCTTCATGTGTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTGCCTGCTATTTCTGTTGCTGTTCGTAAATTTGGCCGATTCCTTCGTGAACTTTCCCATAAAACTCAAGCTGCAGCTGCAGTAGCTGCTTCAATTGCCGAGGAATCTTTTGGCGCCATAAGAACAGTAAGATCTTTTGCCCAAGAAGAATATGAAGTAGCACGCTATTCTGAAAAAGTTGATGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTGGTTGGACTCTTTTCTGGAGGCCTTAACGCAGCATCAACACTGTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCACAGGTTCCATGTCACCTGGTGATCTTACATCTTTCATTCTTTATAGTCTTACGGTGGGATCTGCTGTATCTGGTCTGTCAGGACTGTATACAGTAACAATGAAAGCTGCAGGCGCTAGCAGACGGGTATTTCAACTTCTGGATCGAGTCTCTTCCATGCCTAAGTCAGGGAATAAGTGTCCTCTGGGTGATCAAGTTGGGGAAGTGGAACTAGATGATGTTTGGTTTGCGTATCCATCACGTCCTACTCATATGATACTCAAGGGAATTAGAATGAAAATGCAATCTGGGTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGAGGAAAGACTACTATAGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTCTGGTAGAAATATCACATGAGCATCTACACAGAAAGATCAGTATAGTGAGTCAGGAGTCTGTCCTTTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGTTTGGATGGCAAAGTTAATGCTATTGATATAGAAAATGCAGCTAAAATGGCCAATGCACATGATTTTATATTGAAGTTCCCTGATAAATACCAAACCTATGTTGGAGAACGTGGGGTGCGGCTGTCAGGAGGGCAGAAGCAGAGAATAGCTATTGCTAGAGCCCTGCTTATGGACCCAAAAGTTCTTCTCCTGGATGAAGCCACTAGTGCCCTGGATGCTGAAAGCGAATACCTAGTACAAGATGCCATGGATTCTCTCATGAAGGGAAGGACAGTTCTGGTTATTGCTCATAGGCTATCAACCGTTAAAAGTGCCGACATTGTTGCAGTTGTTTCTGATGGTCAAATAGTTGAGAGTGGCACCCATGACGAACTTCTCAGCAAGAATGGTGTCTATACTGCATTAGTCAGGAGACAACTACAAACAACAAAATCTGAATTCTAG 1890 0.4328 MHSSGNQRAPLLENGERGKQDDPSAGQLTDLEHGDALPAANVGFCRVLSLAKPDAGKLILATLALLVASTSSILIPKFGGKIIDIVSGDIQTPEDKAKALGAVKDTILYIFLIVIVGSVCTALRAWLFSSASERVVSRLRKRLFSHLIHQEIAFFDITRTGELLSRLSEDTQIIKSAATTNLSEALRNLATAFIGLSFMCATSWKLTLLALAVVPAISVAVRKFGRFLRELSHKTQAAAAVAASIAEESFGAIRTVRSFAQEEYEVARYSEKVDETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTITGSMSPGDLTSFILYSLTVGSAVSGLSGLYTVTMKAAGASRRVFQLLDRVSSMPKSGNKCPLGDQVGEVELDDVWFAYPSRPTHMILKGIRMKMQSGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEISHEHLHRKISIVSQESVLFNCSIEENIAYGLDGKVNAIDIENAAKMANAHDFILKFPDKYQTYVGERGVRLSGGQKQRIAIARALLMDPKVLLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSADIVAVVSDGQIVESGTHDELLSKNGVYTALVRRQLQTTKSEF 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1068 629 Pfam ABC transporter transmembrane region 58 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi13g1068 629 Gene3D ABC transporter type 1, transmembrane domain 108 380 IPR036640 GO:0005524|GO:0016020
Glsi13g1068 629 FunFam ABC transporter B family member 25 381 623 - -
Glsi13g1068 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 621 IPR027417 -
Glsi13g1068 629 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524|GO:0016887
Glsi13g1068 629 Gene3D - 381 626 IPR027417 -
Glsi13g1068 629 SMART AAA_5 410 604 IPR003593 GO:0016887
Glsi13g1068 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 620 IPR003439 GO:0005524
Glsi13g1068 629 PIRSF ABC_prm/ATPase_B 11 628 - -
Glsi13g1068 629 FunFam ABC transporter B family member 25 110 380 - -
Glsi13g1068 629 CDD ABC_6TM_AtABCB27_like 61 357 - -
Glsi13g1068 629 CDD ABC_MTABC3_MDL1_MDL2 383 621 - -
Glsi13g1068 629 SUPERFAMILY ABC transporter transmembrane region 46 362 IPR036640 GO:0005524|GO:0016020
Glsi13g1068 629 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 349 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi13g1068 629 Pfam ABC transporter 401 551 IPR003439 GO:0005524
Glsi13g1068 629 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 38 626 IPR039421 -
Glsi13g1068 629 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1068 Glsi-ChrGlsi13 28626378 28631773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1068 75 621 Calmodulin-binding Proteins AT2G36910 38.559 1.31e-102 337