Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1063 ATGCATGGGGCCCTAACCATCCCATTGCGTTGTCGCTACTCCCCCACATTGCATTCATGTGCGTCCCCTGCCTTGGCAACAGAGTTGGCAGCAGAAGAAGAAGAGTCAATGTTTAGATCCCAACATAATGGTATTGACCGTGCATTGAGACTCGTTGGACCTCAGTTCTACTCTATACTTCCTCATCTTCAATGGGACCGTTGGGTTGGGCCTCGTCAGCTCATGTTTTCCATGTTTTCTTTTTCACCTGGGGTTCTGAATCTTCTGACTTCTATTTGGAGCTTCTTTGCTGTGGGTACCTCGGTTCTCGGTTTTTTTCCTAATGGGTTTTCTTTATACAATCTATCTGAAGTACTGTTAAAGTACTACTCTTGCATCAATCGAAGTGGGCCGTTTGCTCTCTCTTGCACTCTGATTCAGGTGCATGTAATGGAGTCTTGGAGTTATGCTTCTGAAGAGAAGGGGTTTGTGTCCAATGATACCCTGTCGCCTCCTAATACGCTTGCGAGAAGCAAAAGTTCCTTCTTGGGGTGGGAATTGAAAACCCCATGTAGTTTTTCCAACGACATGTTAGCCTCGGGTCAACAAAATATGGAGAATCAAAGTTTTGAGGAAATGGGTTTTCCAGAAATATTGGGGAAGCAATTGTCCGATGATCCGATTGGCAGTGTTCCGAGCAGAAAGCTCGATGGAGGTTCTGGTGGTAGAATTATTGGCTCAGTTATGGCTGTCCCAAATGCATTTCCTGGAGGAGAGGACTCGAATTCGAAACTTTCAAACTCTGTGGTTGACTCTAACAGTCGGGATTCGTTCATTGATTTGAAGCTGGGGCAATTTGCTGATCACAGAGATGCCGTGGATTCGACATTTTCCAAAGGAACCCCAATTTTATCTTCTTCCGAGTCATCGGTGCCGCCCAAGAGAGTGCGAGCTTCTGGGATGCAGTCACAAATTCCCTGCTGTCAAGTCTATGGATGTAACAAGGATCTCAGCGCTTCTAAAGAATATCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCCAAAGTTATAGTGAACGGCATCGAGCAGAGGTTTTGTCAGCAGTGTAGTAGGTTTCATTTGCTAGCTGAATTTGACGATGGCAAGCGTAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGTCGGAGAAAGCCACAAGTGGGTATTTACTCTGGAAAGGCCGGAAGATTGCTTCAGCCATACAGTGTTAAATTGTTTGGTCTGAAGTATAATGAAGATCCTGTGGTTCCTGCAGATAGCGGATTCCCAACAACTCCATCTTTTATCTGCCAAGAGATACTCCCGTCTGTGGTTTTGTGTTCTGAAAATTATGGAACAAATGGCTGGTGCAGACCTATAAAAGCTGAAGATGGGACTGATTTTAGGTATCTGCCTGCTGTTCCCATCACAAATGGGCATCCTCAGTCAAGATATCTATTTCCTTTATATGACGAAAGGCAATTTCCTTTTCTTCGTGACAATGGTGCTACATCTGCTTCCGGAAGCATCTTTTGTGAGAACAATAGTCAGTATCCACCTGCTCTCGAGGGATCAAATTCTGGGCCACGAAATTTATTCCAGGACAACTCCTTAGGAAGTGAGGATTTCAATGTTTATGACACAGCATCTACTATTCAAGGATTATCAGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCCTCAAGCCATTCGTCAGGATTTCCCATGGCTCGCTCCTTGGGTATTCCAAGCAGCCATAGCCCTTACAGCCAGAGTCAGCTCTCTGAAAAGATCAGAGGAATAAGCTCAAAGGCTTCTACAATGGATCGTGCTATCGATAGAAGTCATCTAAGTCCTGTCTTGATGTCAGACAACAATAATATTGTCCACTTTGAAATGGAAGATGGCATATTCCAAGGGTTAGATTTTATGAACATGAAAGATGGTCTTTCCTGTGAAGACGGCCCAACCATTGACTTGCTTCAACTATCATCACAGCTCCAGCGAGTTGAGCGTCAGAGGCAATCCTCACAGGTGAAGCTGGAAAGTGATTCTTACTGCTCTCCTCGCACTACTTAA 2103 0.4508 MHGALTIPLRCRYSPTLHSCASPALATELAAEEEESMFRSQHNGIDRALRLVGPQFYSILPHLQWDRWVGPRQLMFSMFSFSPGVLNLLTSIWSFFAVGTSVLGFFPNGFSLYNLSEVLLKYYSCINRSGPFALSCTLIQVHVMESWSYASEEKGFVSNDTLSPPNTLARSKSSFLGWELKTPCSFSNDMLASGQQNMENQSFEEMGFPEILGKQLSDDPIGSVPSRKLDGGSGGRIIGSVMAVPNAFPGGEDSNSKLSNSVVDSNSRDSFIDLKLGQFADHRDAVDSTFSKGTPILSSSESSVPPKRVRASGMQSQIPCCQVYGCNKDLSASKEYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIYSGKAGRLLQPYSVKLFGLKYNEDPVVPADSGFPTTPSFICQEILPSVVLCSENYGTNGWCRPIKAEDGTDFRYLPAVPITNGHPQSRYLFPLYDERQFPFLRDNGATSASGSIFCENNSQYPPALEGSNSGPRNLFQDNSLGSEDFNVYDTASTIQGLSDSGCALSLLSSQSQNSSSHSSGFPMARSLGIPSSHSPYSQSQLSEKIRGISSKASTMDRAIDRSHLSPVLMSDNNNIVHFEMEDGIFQGLDFMNMKDGLSCEDGPTIDLLQLSSQLQRVERQRQSSQVKLESDSYCSPRTT 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1063 700 MobiDBLite consensus disorder prediction 681 700 - -
Glsi13g1063 700 MobiDBLite consensus disorder prediction 574 605 - -
Glsi13g1063 700 Coils Coil 668 688 - -
Glsi13g1063 700 Gene3D - 311 382 IPR036893 GO:0003677|GO:0005634
Glsi13g1063 700 ProSiteProfiles Zinc finger SBP-type profile. 318 395 IPR004333 GO:0003677
Glsi13g1063 700 SUPERFAMILY SBT domain 319 399 IPR036893 GO:0003677|GO:0005634
Glsi13g1063 700 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 197 686 IPR044817 GO:0003677
Glsi13g1063 700 FunFam Squamosa promoter-binding-like protein 14 312 382 - -
Glsi13g1063 700 MobiDBLite consensus disorder prediction 591 605 - -
Glsi13g1063 700 Pfam SBP domain 321 394 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1063 Glsi-ChrGlsi13 28597542 28603259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1063 144 433 SBP-box Gene Family AT1G69170 41.034 2.39e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi13g1063 SBP 2.7e-31 No_clan