LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g1062	ATGGGAAGGGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAGGTCACATTTGCCAAGAGAAGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGCAGCGGCTCCAGCATGATGAAAACACTTGAGAAGTACCAGAAGTACAGTTATGGTGCACTGGAGACAAGCCAGCCAATGAATGACCTTCTGAGCAACTACCACGAGTATTTGAGACTAAAAGCAAACGTAGAAGTCCTGCAACGTTCCCAGAGGAACCTTCTTGGGGAAGATCTGACCGAAATGAATACAAAGGAGCTGGAGCAGCTTGAGAATCAAGTGGAGGCAGCACTTAGGAATATCAGATCCACAAAGACTCAATATATGCTTGACCAGCTTGCGGATCTTCAGAACCGGGAAAGAGTGCTTGATGAAACTAATAAAGCCTTAAAGAGCAAGTTGGAAGAAAGAAGCAACTACGAAGTTCCTAGACTGGCTTGGGAAGCCGCAGGAGGGCCTGCCATCCATTCCGCTCGCTTTCCACCTCAATCTGAGGGGTTTTTCCAGCCTTTGGTGGGACTCAATCCCAATTTGCAAATTGGATATAATCAGGTGGGACCCGATGTTGGAAATGTTGGAGGTCAAGCCTTAAACATTCATGGATTCGTGTCTGGGACGTGGATGCTTTGA	741	0.4723	MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMMKTLEKYQKYSYGALETSQPMNDLLSNYHEYLRLKANVEVLQRSQRNLLGEDLTEMNTKELEQLENQVEAALRNIRSTKTQYMLDQLADLQNRERVLDETNKALKSKLEERSNYEVPRLAWEAAGGPAIHSARFPPQSEGFFQPLVGLNPNLQIGYNQVGPDVGNVGGQALNIHGFVSGTWML	246

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g1062	246	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Glsi13g1062	246	Coils	Coil	150	173	-	-
	Glsi13g1062	246	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	161	-	-
	Glsi13g1062	246	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Glsi13g1062	246	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Glsi13g1062	246	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Glsi13g1062	246	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Glsi13g1062	246	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Glsi13g1062	246	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Glsi13g1062	246	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g1062	Glsi-ChrGlsi13	28582706	28587440	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g1062	1	218	MADS-box Gene Family	AT5G15800	62.613	2.31e-89	263

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Glsi13g1062		K-box	1.6e-25	No_clan

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