Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi13g1061 | ATGGGGAGGGGAAGAGTACAGCTGAAGAGGATCGAGAACAAGATCAATAGGCAGGTCACCTTCTCCAAGAGGAGGTCTGGTTTGCAGAAGAAAGCCCATGAGATCTCTGTGCTTTGCGACGCTGAGGTTGCTCTAATTGTCTTCTCCACCAAAGGCAAGCTCTATCAGTACTCCAGCGACCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCCTATGCAGAAAAGCAGCTAGTTGCATCTGATCAACATTCACAAAATCCAAATGAAAACTGGACTCTAGAACACGCAAAACTTAAAGCTAGAATGGAAGTCCTACAAAGAAATCAAAAGCTTTTTAAGGGAGAAGATCTGGAAGGACTAAGTCTCAAAGAGCTTCAGAATTTGGAGCAACAGCTTGATTCTGCTCTCAAACTTATTAGATCACGCAAGCACCAACTCATGTATGAATCAATTTCAGAGCTTCAGAAAAAGGACAAGAAACTCCAGGAACAAAACAACTTGCTAGCCAAGAAGATAAAAGAAAAAGAGAAGGCACTGGCCCAACAGGAACAACTGGAGGAGCAGCAAAATGATAATGGGGAAGAAACCTGTGTCCTTGTACCACCAATCTTCCATGCCTCGAATATTGGAGGCTCCGTCGACCAAGCAATGGATGGTGCAGTAGATGATGAAGGAACTCCAACTCAAACTCGAGCCAGCCAGCTCCTTCCCCCTTGGATGCTGAATGAATAG | 741 | 0.4453 | MGRGRVQLKRIENKINRQVTFSKRRSGLQKKAHEISVLCDAEVALIVFSTKGKLYQYSSDPCMERILERYERYSYAEKQLVASDQHSQNPNENWTLEHAKLKARMEVLQRNQKLFKGEDLEGLSLKELQNLEQQLDSALKLIRSRKHQLMYESISELQKKDKKLQEQNNLLAKKIKEKEKALAQQEQLEEQQNDNGEETCVLVPPIFHASNIGGSVDQAMDGAVDDEGTPTQTRASQLLPPWMLNE | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi13g1061 | 246 | ProSiteProfiles | K-box domain profile. | 91 | 181 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
| Glsi13g1061 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | MobiDBLite | consensus disorder prediction | 213 | 246 | - | - | |
| Glsi13g1061 | 246 | CDD | MADS_MEF2_like | 2 | 79 | IPR033896 | GO:0000977|GO:0045944 | |
| Glsi13g1061 | 246 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | Coils | Coil | 125 | 148 | - | - | |
| Glsi13g1061 | 246 | Coils | Coil | 154 | 195 | - | - | |
| Glsi13g1061 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 180 | - | - | |
| Glsi13g1061 | 246 | Coils | Coil | 91 | 111 | - | - | |
| Glsi13g1061 | 246 | SUPERFAMILY | SRF-like | 2 | 89 | IPR036879 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | FunFam | MADS-box transcription factor MADS-MC | 13 | 86 | - | - | |
| Glsi13g1061 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi13g1061 | 246 | Pfam | K-box region | 87 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi13g1061 | Glsi-ChrGlsi13 | 28569482 | 28575090 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi13g1061 | 1 | 194 | MADS-box Gene Family | AT1G26310 | 65.152 | 8.46e-87 | 256 |
Transcription factors information