Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1051 ATGGAGCTTCCTCGAGCGCGTCCCTTTGGAACCGAAGGAAGAAAACCGACGCATGATTTTCTGTCACTGTACAGTCATTCAACTGCCCATCTAGATCCGAGGCCATCCTCTCAAGGAAGTTACCTCGAAACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAGAGGAAAGCAAATGCCAAGGAAGAAGCAGCAGATGAAATATCATCAGTGGTAATTCAAAAGCCACCGCCTCCAGCACCACCACCATCGGTTGAGCACATCCTGCCTGGAGGGATTGGGACTTACAGTATTAGCCACATTTCCTATTTTAGTAATCAAAGGGTTCCAAAGCCGGAGGCATCATCCCTGTTCACTGTGGCTCATGAACCTAGTACGGATAGAAATGAGAACTCCAACTGCAGTTCATACACTGGAAGTGGTTTCACTTTGTGGGAGGAATCTGCAGTTAAGAAGGGAAAGACAGGGAAGGAGAATGACGTGGGAGAGAAACCCATTATAGGAGAGTTTGCGGCAAAGCCAGGGCAGTGGAAGCTGAAGGAGAGAACGTGTCAGTCGTTTTCCAACAATCATCACAGCAGCTTCAACTCTATTTCCTCCTCGCAGACAACTGGGCAGAAGAATCAGAGTTTTATGGAAATGATAAAATCGGCCAAGGATTGCGCTCAGGATGAGGAGCTAGACAATGAAGAAGCATTCATTCTTAAGAAAGAACCCTCAAATAGCCAGAGAGGGGAGATAAGAGTGAAAGTGGATGAGAAGAGCACTGATCAAAGGCCAAACACGCCACGATCAAAACACTCTGCAACAGAGCAGCGTAGAAGGAGCAAAATTAATGACAGATTCCTGATGTTAAGAGAGCTTATCCCACACAGTGACCAGAAGAGAGATAAGGCATCTTTTTTGTTAGAGGTCATTGAGTATATTCAGTTTCTACAAGAGAAGGTGCATAAGTACGAGGGGTCATACCAAGTGTGGAATCAAGAGACAGAAAAATCGACGCCATGGAGAAATAATCACAGGCCTTCAGAAAACTATGATGATCAATCTCATGACATAAGTGGTGGGTCTGGTCCATCTCCAACAATACTGTTTACTTCAAAGATTGATGAGAAGAATATCATTATTTCCCCAACGATTACTGGGAGCACCCAGAACGTAGAAGCTGACAGGAGCACTGCTACTATCCTCAAGGCAAGGGATCAACATCCTGGAATAACCAATAAGGCCATGCCAATTCCTAACTCTTCACAGCCAAATTTCTTCAGTCCTAGCCAAAGTGGTGGTCCAGGTGGAGTGGCGTCTCAGCTCACACATAGGCTGGCATCAGATGCAGAAAACATCATATATAAATCTTCAGTGCAATCTCAAACCTGTGCCACAGAAGTGACTGCTGCTAGTGATAAGCTGAAAGAGAAAGAGCTAACTATTGAAGGTGGCGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGGATACACTAACGCAAGCACTGAAGAGTTCAGGAGTGGATTTGTCAGAGGCTAGCATCTCAGTGCAAATTGAGCTTGGCAAACAAGCTAACATCAGACCAATTGTAACATCTGGTGCTAAGGATGAAGTTGCTTCTTGCAATAAAGGGATGAAGCGATCCAGAGTTTCTAGCGTTGAGGAGTCTGACCAAGCAGCAAAGAAGCTCAAGACGGGGGGTGTATTTATGTCTTCTGCTGGCTTCTTATCCAGCAAGGTTGAGATTGACTGTACATGTAGTGTCTTCTTAGTTTGTTGGGACCCTTAG 1782 0.4523 MELPRARPFGTEGRKPTHDFLSLYSHSTAHLDPRPSSQGSYLETHDFLQPLERVERKANAKEEAADEISSVVIQKPPPPAPPPSVEHILPGGIGTYSISHISYFSNQRVPKPEASSLFTVAHEPSTDRNENSNCSSYTGSGFTLWEESAVKKGKTGKENDVGEKPIIGEFAAKPGQWKLKERTCQSFSNNHHSSFNSISSSQTTGQKNQSFMEMIKSAKDCAQDEELDNEEAFILKKEPSNSQRGEIRVKVDEKSTDQRPNTPRSKHSATEQRRRSKINDRFLMLRELIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGSYQVWNQETEKSTPWRNNHRPSENYDDQSHDISGGSGPSPTILFTSKIDEKNIIISPTITGSTQNVEADRSTATILKARDQHPGITNKAMPIPNSSQPNFFSPSQSGGPGGVASQLTHRLASDAENIIYKSSVQSQTCATEVTAASDKLKEKELTIEGGAISISSVYSKGLLDTLTQALKSSGVDLSEASISVQIELGKQANIRPIVTSGAKDEVASCNKGMKRSRVSSVEESDQAAKKLKTGGVFMSSAGFLSSKVEIDCTCSVFLVCWDP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1051 593 MobiDBLite consensus disorder prediction 60 83 - -
Glsi13g1051 593 MobiDBLite consensus disorder prediction 330 358 - -
Glsi13g1051 593 SMART finulus 268 318 IPR011598 GO:0046983
Glsi13g1051 593 Pfam Helix-loop-helix DNA-binding domain 264 313 IPR011598 GO:0046983
Glsi13g1051 593 CDD bHLH_AtBIM_like 261 337 - -
Glsi13g1051 593 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 330 IPR036638 GO:0046983
Glsi13g1051 593 Gene3D - 260 335 IPR036638 GO:0046983
Glsi13g1051 593 MobiDBLite consensus disorder prediction 233 277 - -
Glsi13g1051 593 Coils Coil 51 71 - -
Glsi13g1051 593 MobiDBLite consensus disorder prediction 334 348 - -
Glsi13g1051 593 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 312 IPR011598 GO:0046983
Glsi13g1051 593 Coils Coil 309 329 - -
Glsi13g1051 593 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 11 563 IPR044295 GO:0003700|GO:0006351|GO:0046983
Glsi13g1051 593 FunFam BHLH domain class transcription factor 260 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1051 Glsi-ChrGlsi13 28508955 28514489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1051 1 564 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 49.063 8.15e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi13g1051 HLH 2.7e-14 No_clan