Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1049 ATGGTTGGAGTGAGAGATGGTGCCGTACGTGGTGGTGGGTTCGACGACCATGGTGACGGTCAGGCCTTGGGTGAGGTCAATGTTTCTGGTTTTGTGCTTAATCTTGTTCACTCAGCTCCAAAAACTGGTTCTTTGGAAGAGGAACGCCTCAGAGCTCCTGCAAAAATGTCGTTCCTTTCAGATTTCCCAAACAAACGACTTAAAACCCACATCGAAGAGGATCCCAATCACCACCTCGACCTGCGACCATCCTCCGACGACAACCAGTCTGTTTCCTGTGGAATTTGCTACGTCGACCATCAGGTTTCAATCAGAGGTGAAATTAATTGCTGCAATCACTATTTTTGCTTCGTGTGCATCATGGAATGGTCCAAGCATGAGTCTCGATGCCCTATCTGTCGTCAGAGATTCTCCACCATTCGCAGGCCGCCAAAGCCCGGCGTCTTTCCTTCCTCACGCCTCGTTAAAGTCCCTCTTCGTGACCAGGTTTACCATGGTAATGGTAATATGACAACTGGTCCTGCTGATCCTTATGCTGAAGTCCAGTGTAGTGTGTGTGATGGTAGAGAAGATGAAAGTTTTCTACTACTATGTGATCTTTGTGATGCCGCTTCTCATACATATTGCGTTGGCCTTGGATATACTGTGCCTGAAGGTGATTGGTTTTGCCATGATTGTGCTGTTTCTCGGGCAGCCAATGACAATAATGAAATGGATGATCAATATGATATTCCAACAGCTGAGTCAATAGTAACAATCTTTGATATTGTGAGAGAACCAAACAGCCAGGTGTTGAGAAGACTAAGACCATCTCCTTCTGCTATCCCTATATGTGATAGGGTTAATAGAAACAAAGATAAACCTCCTAACTCAGTTGCAAGGACACTGCATCGTTGTCGCAATGTACAACGTAGTATACAAGCGCTGCGTGAAAATTGGAATGCTTTGAGAAGTGGCTCATTAAGGTTCAATTCCAATTCATTTGAATCTGGTGGCACCTATGGTCGAAAACAAGATTCTGATTCTTTATCACATGGAAAATCAGATCAACCACATTCTTTGGCTTCCACAAGCCTTCCGCAATCCACAATTCAAGGTAGCCCTTCTAGTAACATAGTGGGTGAGAGAGGCTTGAAAGATGTCCACAAGGCTTGGAAAATGATGGAGAGAGCAAAGATGGCGCAAAAGACTCGTCAAAGAACCAACATTCTTCCACTGGGACTGGACCATCCTTCAAGTGGTGCAGGAGCTAGGAAAGCATCAAGCGTTCATTGTAGTTTCAAAGAACTGAAAACTCAACAATCTAGAAGGTCCACTAGAATGGAGAAGCAGTTCAATTCCAGTTTCAATAACGATTTGGACAATCACAGGCTTCCAAAGTTGAGAGAGCAAAAGCATAGCAGGGTCACATGTAAGGAGCTGACACAACTTATTAGGGACCATGCTTCTCCTTTAGAAGGATACTGTGAACCTCTATTGCCAAAAAAAGTCCATACTAGTATTCAAGGTGCTCCCTGTCATGAAAATGGGGAGAGAAATTTTGCTAAGGAGCAAAGCAGGTCTTCTTGTTTGGTAACATTGGTAGATTCAGCTCCTTCTCGTGGCAAGTTTGATAGTGTGTCCTCCTCTGGTCGGGAGGTGGATGAAAAAAAGAGGTTGGCTAAAAGCTTTGGAGACGGAAGCCCTAGAAAAAGTGAAGATGCAAAAAACGAGATCAAGTCTCTTGTCAAGCTCAATTTGAAGGTCCTAAGTAAACGTAAACCATTAGGTGCTGATACATTTAAGGAAGTGGCAAGGAAGTCAACACACACCATTTTGGCTGCTTGTAAATCGGATCACCAACAGTCTGATGTTGGCTCCTCAAGCTCAGTTTGCAGTCACAAGGACAATATTCAGCTGTTTCATAAATCTACCTTAATGCCTAATTGTTGCCGACAATGCTTTTACATGTTTGTAGAGCATGTTGTCAACTCCATTATGATGGAGAAAGTGGGTTGTGCTACATCTTCACGAGGCATCTTATCGTAA 2028 0.4384 MVGVRDGAVRGGGFDDHGDGQALGEVNVSGFVLNLVHSAPKTGSLEEERLRAPAKMSFLSDFPNKRLKTHIEEDPNHHLDLRPSSDDNQSVSCGICYVDHQVSIRGEINCCNHYFCFVCIMEWSKHESRCPICRQRFSTIRRPPKPGVFPSSRLVKVPLRDQVYHGNGNMTTGPADPYAEVQCSVCDGREDESFLLLCDLCDAASHTYCVGLGYTVPEGDWFCHDCAVSRAANDNNEMDDQYDIPTAESIVTIFDIVREPNSQVLRRLRPSPSAIPICDRVNRNKDKPPNSVARTLHRCRNVQRSIQALRENWNALRSGSLRFNSNSFESGGTYGRKQDSDSLSHGKSDQPHSLASTSLPQSTIQGSPSSNIVGERGLKDVHKAWKMMERAKMAQKTRQRTNILPLGLDHPSSGAGARKASSVHCSFKELKTQQSRRSTRMEKQFNSSFNNDLDNHRLPKLREQKHSRVTCKELTQLIRDHASPLEGYCEPLLPKKVHTSIQGAPCHENGERNFAKEQSRSSCLVTLVDSAPSRGKFDSVSSSGREVDEKKRLAKSFGDGSPRKSEDAKNEIKSLVKLNLKVLSKRKPLGADTFKEVARKSTHTILAACKSDHQQSDVGSSSSVCSHKDNIQLFHKSTLMPNCCRQCFYMFVEHVVNSIMMEKVGCATSSRGILS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1049 675 SUPERFAMILY FYVE/PHD zinc finger 180 228 IPR011011 -
Glsi13g1049 675 PANTHER F18C1.6 PROTEIN 70 664 - -
Glsi13g1049 675 ProSiteProfiles Zinc finger PHD-type profile. 180 229 IPR019787 -
Glsi13g1049 675 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Glsi13g1049 675 ProSiteProfiles Zinc finger RING-type profile. 93 134 IPR001841 -
Glsi13g1049 675 MobiDBLite consensus disorder prediction 347 372 - -
Glsi13g1049 675 MobiDBLite consensus disorder prediction 541 569 - -
Glsi13g1049 675 Pfam PHD-finger 183 227 IPR019787 -
Glsi13g1049 675 SUPERFAMILY RING/U-box 83 148 - -
Glsi13g1049 675 Pfam Ring finger domain 92 134 IPR001841 -
Glsi13g1049 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 151 IPR013083 -
Glsi13g1049 675 MobiDBLite consensus disorder prediction 326 377 - -
Glsi13g1049 675 MobiDBLite consensus disorder prediction 533 569 - -
Glsi13g1049 675 SMART PHD_3 182 227 IPR001965 -
Glsi13g1049 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 249 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1049 Glsi-ChrGlsi13 28497527 28502317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1049 174 230 C2H2 Transcription Factor Family AT3G01460 39.655 4.60e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi13g1049 PHD 3.5e-09 CL0390