Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1047 ATGATGTCGACAGTGGTGGATGTCACCTGCCTTCGCCTCCGCCAACTAGATGACCATCCTCAGCAAACCCTAACTTTGGATTCCATTTCTTATTCGTCCCTTAACGATTGCGATTTCGATTTCTATGCTTCTGATCTGGAATCTCCACCGGCTGATCCCTCCCGCCATACTCGTATTGCCTCTCGTGATGGGGACTTGTCTGACCAATTTGAATCCACTATCTGTATACGAGGTGCGGACGACTTCTCGGACCCTGCTTCGATGCCCAGTACCGATCTATTGCACCGCGAAAACCCGGTAAATTTCGTTATGGATCTATTTCAACAACGTGTTGAGCAATCGCGGGTCATGGTTCATAGCGATTTGCTCTCCGAAGCGCTTAATGATTCGCGTTTTGGTGTTCTCGACGGGCATAATGACTTGGGTATTGATGGTTTGGGGTTAGGATTTGGTTTCGAGAGGGATTCTTTGCATGGCGATGATAATTGTGGATTTATGGTTGAAAATTATGGTTCTGGTGGAGGCGGCGATGATGATGATTTCTTCATTGGGAGAAGGGTTTCTGGATATGAATCCGGTGACGCGACGTCTACTGCAAGTGGGATACAACCTTTCGATAACTGTGTCCGGCTTCTTGGGTTTGGCTCGGATTCTGATGAGGAGCAGAATGAGGTTTTGGGTATTTGTCTGCATTCGGACGACGAGTATAACTTGCACGATGAGAATGACGATGTTGCCAGCATTCCTCTTTGTTGGGATTCATTTCATTTGGATGATAATAGGGAGGTTAACCAAGATTTTGAGTGGGAGGAAGTGGATGATGGACTTGATGAGAGGGAGGTTCTGAGCATGCTCACGGCCGAGGATGATAGGTCTGTTTCAGTTTCCGTATCTCCAATACTTGGGCTTGAAGAAGACGTAACAGTTATGAGGATGGGAGGTATGGAAAATTTGGAGTGGGAAGTGTTGTTGAATGCCAATAATTTTGATGCAAATCCTGATTTGGATCATGATGGCGGAATTTATTTTGGTGATCATGATGATTATATTTATACTGCAGAGTATGAAATGATGTTTGGTCAATTTGCTGAGAACGAGAATCCCTTAATGGGTAGGCCTCCAGCTTCCATATCTGTCGTTCAGAATCTTCCATCAGTGTTGGTGACCAAAGAAGATGTGGAGAACAATAACGCACTTTGTGCAGTTTGTAAGGATGACTTTAATATTGGGGAACAAGTAAAACAGTTACCATGCTCACATCGCTACCATGGTGACTGCATTATACCATGGTTGGGCATTCGGAATACTTGTCCTGTCTGTCGTTATGAGTTTCCTACTGATGATGCTGATTATGAGCATAGGAGGGCCCAAAGATCTGGCCGGAGGCCATGA 1392 0.4526 MMSTVVDVTCLRLRQLDDHPQQTLTLDSISYSSLNDCDFDFYASDLESPPADPSRHTRIASRDGDLSDQFESTICIRGADDFSDPASMPSTDLLHRENPVNFVMDLFQQRVEQSRVMVHSDLLSEALNDSRFGVLDGHNDLGIDGLGLGFGFERDSLHGDDNCGFMVENYGSGGGGDDDDFFIGRRVSGYESGDATSTASGIQPFDNCVRLLGFGSDSDEEQNEVLGICLHSDDEYNLHDENDDVASIPLCWDSFHLDDNREVNQDFEWEEVDDGLDEREVLSMLTAEDDRSVSVSVSPILGLEEDVTVMRMGGMENLEWEVLLNANNFDANPDLDHDGGIYFGDHDDYIYTAEYEMMFGQFAENENPLMGRPPASISVVQNLPSVLVTKEDVENNNALCAVCKDDFNIGEQVKQLPCSHRYHGDCIIPWLGIRNTCPVCRYEFPTDDADYEHRRAQRSGRRP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1047 463 ProSiteProfiles Zinc finger RING-type profile. 400 441 IPR001841 -
Glsi13g1047 463 Pfam Ring finger domain 400 441 IPR001841 -
Glsi13g1047 463 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 291 445 - -
Glsi13g1047 463 FunFam E3 ubiquitin-protein ligase RING1-like 361 447 - -
Glsi13g1047 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 447 IPR013083 -
Glsi13g1047 463 SMART ring_2 400 440 IPR001841 -
Glsi13g1047 463 SUPERFAMILY RING/U-box 379 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1047 Glsi-ChrGlsi13 28492901 28494292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1047 92 447 C3H Transcription Factor Family AT5G60820 40.576 2.80e-59 198