Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1042 ATGCCGAAGGTAGACTATGGCGATGGCTACCCAAGCACCTGGGTTCACCTCTGTGATAGATGCAGAGTGAGTCCATCCCTCCTTTACTGCCATACTGATTCAGCTTACCTCTGTTCTGCTTGTGATGAACGCGTCCACCCAATAGGCTCTCCCTGTTGGCCTCACCATCACGTGCAGGTTTGTGAATCATGTCAGAATGCTCCTGCAGTTTTCACCTGCAAGGCTGATGCAGCGTCACTCTGCATCAACTGTGACTTCGAAATCCACTCTGCAAGTGCAAGCCCAACTGCTAGCAGCCATAACAGAGTCCCTGTGTCGCCTCTGTCTCAGTTAGTGGATGAGACTAAAGCAACGAATTCCATTACAGATGACCAGCCTTACTCAGTAGTGGACAAGGCTAATGAAATTGTGGATTATAACAAAAATAGCAAGGAAATGGATGAACTTGAAGTTGACTCTTGGTTGTTGTTTGATTCTGAGACAATAGAAAGCCAGGGGGTCGATGATGGGTTTATGGTTGGTGAAGCAGCTGATCATGGGCACTTGGGGGCCGTAGAATCGGCTTCATCCGCCAAGTTTGTTCATAACCCTAGTGAGCAGAATCAGCAGCAAACTTATGGCTTTGCTGAAGATCAGATGAATAGTGAAAGTACTGACAGTGTTGTGCCAATTCAATCTGTTGAAGCTCAGCCACAGGAACAGCAGCAGCAGAATATCTACTTCAGTATGGAGCATGAACCTGCAAGAGTGGCTTTCCCTAATTATCCTTCAAATTGTCGAAGTGTGCCTTTGCCCTTCATGGATGGCCAACTTTTTCCTATTAGTGACATGTCAGGCTATAGGTTTCCGGAAGAGGTGGAGATGTTACCAAATCCTTCGGTTTCGATGCAAATCCAGTTTAGTCAGATGAACAAAAAAGTAGGTATTGAAAAGTACAAAGAGAAAAAGAAATCAAGGAAGTTTGAGAAAAAAATAAGATATGCCTGTAGAAAAGTCGACGCCGACAAACGACCCAGAGTTAAAGAGTTGGTAAGAGAACACGAGGTTCGGTACTATTCTATTCTCTGCAAGGTATCTTTGCTTCATGTTCCAGTGTTTTGCTATGAGCAGGTGGTGCATGGATCTGGAATCCATGTTCCAAACCCTAATTGGGGTGCCCTCTTCAGTATTGGCGCGGCTCTTGCATTATCAACGCCCAGCATAGGCAAAATCTGGTTTTTGACCAACTCTGTGGCCAACAAGAGTCCGCTGGAGATTCCCAGATCACTATTAGTCAGTGTCTTCTTGATCTTCCATGGGTCTTCCTACAGGGTTAACTCCACCATAAGCAATGAATCCACAGGTCAAAAAGAGTTCGTGGCTCACTCTTCGCTAATAATTAGCACCGGGGTAATAGACTATGCCAAGTGTTTGCTTGGATGTCTGAATGATACTGTACCAGATGAACAAATCTTTGAGACCATAAAATCTTCCGAGGCTTCCACGCATCTAGCTGTCTTTTGCTGCAAAAGTCAGAGAATTAATGAGGTATTTAGATTTCCAGGGGGTGTGGTGAGGATGGAGCAATCCCAAATCAATGGAGGTGCAGAGGAATGTCACAGCAGTGAGTCTGGGTGGACCATGTATATTGGATCGCCCATAAATGATGATGAACACAGTGATGATGGAGATAATGATAACATGGACGATGAAAACAGTAATCAAGCTGAGCTAGAAGATCATGAAAGTGATGATTCTATGGCTTCTGATGCTTCTTCTGGCCCAAGTCATTTTGGACATCCATGGGGGAATAGCGAAGGCGGCTATGGCTATGGCTTGGCAGAATTCCAGCAAGCAGCGGCGGAAGAGGAGCATGATGAAAAGTCTTGCTTAGACAAGAACGAAAACAAAATCAAAGAAAATCGAATAGTAGAAAAAAAGGTGAAAAAGAATGAAATGGTCTTCATTGATAACAACAAAGGAAAGGATCCAGTTCAGGGCGATGGCAACAAGGTGAGAAAAAATTACTGGGTTGGAAAAAGGAAATAG 2028 0.4443 MPKVDYGDGYPSTWVHLCDRCRVSPSLLYCHTDSAYLCSACDERVHPIGSPCWPHHHVQVCESCQNAPAVFTCKADAASLCINCDFEIHSASASPTASSHNRVPVSPLSQLVDETKATNSITDDQPYSVVDKANEIVDYNKNSKEMDELEVDSWLLFDSETIESQGVDDGFMVGEAADHGHLGAVESASSAKFVHNPSEQNQQQTYGFAEDQMNSESTDSVVPIQSVEAQPQEQQQQNIYFSMEHEPARVAFPNYPSNCRSVPLPFMDGQLFPISDMSGYRFPEEVEMLPNPSVSMQIQFSQMNKKVGIEKYKEKKKSRKFEKKIRYACRKVDADKRPRVKELVREHEVRYYSILCKVSLLHVPVFCYEQVVHGSGIHVPNPNWGALFSIGAALALSTPSIGKIWFLTNSVANKSPLEIPRSLLVSVFLIFHGSSYRVNSTISNESTGQKEFVAHSSLIISTGVIDYAKCLLGCLNDTVPDEQIFETIKSSEASTHLAVFCCKSQRINEVFRFPGGVVRMEQSQINGGAEECHSSESGWTMYIGSPINDDEHSDDGDNDNMDDENSNQAELEDHESDDSMASDASSGPSHFGHPWGNSEGGYGYGLAEFQQAAAEEEHDEKSCLDKNENKIKENRIVEKKVKKNEMVFIDNNKGKDPVQGDGNKVRKNYWVGKRK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1042 675 CDD Bbox1_BBX-like 60 105 - -
Glsi13g1042 675 MobiDBLite consensus disorder prediction 651 675 - -
Glsi13g1042 675 Pfam CCT motif 309 341 IPR010402 GO:0005515
Glsi13g1042 675 MobiDBLite consensus disorder prediction 552 571 - -
Glsi13g1042 675 SMART bboxneu5 13 51 IPR000315 GO:0008270
Glsi13g1042 675 SMART bboxneu5 56 105 IPR000315 GO:0008270
Glsi13g1042 675 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 341 IPR045281 GO:0009909
Glsi13g1042 675 CDD Bbox1_BBX-like 17 46 - -
Glsi13g1042 675 ProSiteProfiles Zinc finger B-box type profile. 17 46 IPR000315 GO:0008270
Glsi13g1042 675 ProSiteProfiles Zinc finger B-box type profile. 56 105 IPR000315 GO:0008270
Glsi13g1042 675 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Glsi13g1042 675 Pfam B-box zinc finger 59 105 IPR000315 GO:0008270
Glsi13g1042 675 MobiDBLite consensus disorder prediction 539 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1042 Glsi-ChrGlsi13 28466804 28474691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1042 13 341 C2C2-CO-like Transcription Factor Family AT3G02380 37.135 9.87e-49 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi13g1042 zf-B_box 2.6e-06 No_clan