Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1037 ATGCTGAAGGTAGACTATGGCGATGGCTACCCAAGCAACTGGGTTCACCTCTGTGATAGTTGCAGAGTGAGTCCATCCACCCTTTACTGCCATACTGATTCAGCTTACCTCTGTTCTTCTTGTGATGAACGCATCCACGCAATAGGCTCTCCCTGTTGGCCTCACCATCGCGTGCAGGTTTGTGAATCATGTCAGAATGGTCCTGCAGCTTTCACCTGCAAGGCTGATGCTGCCTCACTCTGCATCAACTGTGACTTTGAAATCCACTCTGCAAACCAAATTGCTAGCCGCCATAACAGAGTCCCTGTGTCGCCCCTGTCTCAGTTAGTGGATGAAAGTCATGAAACTATAGTTACGAATTCCATTACAGATGATCAGCCTTACTCAGTGTTGGACATGGCTAATGAAACTTTGGATTATAACAATAGTAGCAAGGAAATGGATGAACTTGAAGCTGACTCTTGGTTGTTGCTTGATTCTGAGACAATAGAAAGCCAGGGGGTTGATGATGGGTTTATATATGGTGAAGTAGCTGATCATGGGAACTTGGGTGCCCGAGAATGTGATTCATCCCCCAAGTTTGATCATTTCCCAGATGAGCAGAATCAGCAGCAAGCTTACAGCTTTTCTGAAGATCAGATGAGTAATGAAAGTACTGACAGTGTTGTGCCAATTGAATGTGTTGAAGCTCAGCCACTGCAACAGCAACAGCAACAACAGCAGCAACAGAATATCTACTTCAGTAAGGAGCATGAACCTTCAAGAGTGGCTTTCACTAATGATCCCTCAAATTGTCGGAGTGTTCCTTTGCCCTTCATGGATGGCCATGTTTTGCCAATAAGTGACATGTCAGGCTATAGGTTTCCGAAAGGGCTGGAGATGTTCCCAAATCCTTCAGTTTCAATGCAGATCCAATTTGGTCGACAAATGAACAGGAAAGCAGGTATTGAAAAGTACAGAGAGAAAAAGAAATCAAGGAAGTTTGAGAAGACAATAAGATATGCCTACAGAAAAGCCTACGCTGACAAACGACCCAGGGTTAAGGGCAGATTTGCAAAGAGAGAAGACTTAACTTCAGCAGGATCTGTTCCTCTCAATTGA 1101 0.445 MLKVDYGDGYPSNWVHLCDSCRVSPSTLYCHTDSAYLCSSCDERIHAIGSPCWPHHRVQVCESCQNGPAAFTCKADAASLCINCDFEIHSANQIASRHNRVPVSPLSQLVDESHETIVTNSITDDQPYSVLDMANETLDYNNSSKEMDELEADSWLLLDSETIESQGVDDGFIYGEVADHGNLGARECDSSPKFDHFPDEQNQQQAYSFSEDQMSNESTDSVVPIECVEAQPLQQQQQQQQQQNIYFSKEHEPSRVAFTNDPSNCRSVPLPFMDGHVLPISDMSGYRFPKGLEMFPNPSVSMQIQFGRQMNRKAGIEKYREKKKSRKFEKTIRYAYRKAYADKRPRVKGRFAKREDLTSAGSVPLN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1037 366 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Glsi13g1037 366 SMART bboxneu5 56 103 IPR000315 GO:0008270
Glsi13g1037 366 SMART bboxneu5 13 51 IPR000315 GO:0008270
Glsi13g1037 366 Coils Coil 133 153 - -
Glsi13g1037 366 MobiDBLite consensus disorder prediction 347 366 - -
Glsi13g1037 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 356 IPR045281 GO:0009909
Glsi13g1037 366 CDD Bbox1_BBX-like 17 60 - -
Glsi13g1037 366 ProSiteProfiles CCT domain profile. 312 354 IPR010402 GO:0005515
Glsi13g1037 366 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Glsi13g1037 366 CDD Bbox1_BBX-like 60 103 - -
Glsi13g1037 366 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Glsi13g1037 366 Pfam CCT motif 312 354 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1037 Glsi-ChrGlsi13 28439379 28441559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1037 1 354 C2C2-CO-like Transcription Factor Family AT3G02380 37.875 9.15e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi13g1037 zf-B_box 3e-06 No_clan