Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1034 ATGGTGTCAAATAATGTCAGTGAGAGGAAAGCATATGCAGGTTTAGTTGGTATTTATAAGCATATAGGGTGGACATCCTTGCTTTCCTTGATGGCACAAGATACTGCTTCTGGTGCTGAATTACCTCAGAGACCTTCTGGTCTACTGCGAGATCAGGTTCAGCTAGTAAAAAGAAAGGACTTGGATCGCTATGAAATTGTCTCGGTTCACGATTCTCTGTCATTTGAGAAAGGTTTCTTCAAAGTTATTCGTGCATGCCAGTTGCTGGCTCAAAAGAATGATGGGATAATATTAGTAGGAGTTGCAGGTCCCTCTGGAGCAGGGAAGACTGTTTTCACTGAGAAGATCCTCAACTTTATGCCAAGCATTGCTGTCATAACAATGGACAACTATAATGATTCTAGTCGAATCATAGACGGCAACTTTGATGACCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGATGTCAGTTCAGGTTCCAATATATGATTTCAAGTCTAGCTCTCACATAGGTTACAGAACTGTTGAAGTCCCTAGTTCCCGCATTGTTATCATAGAAGGAATCTATGCCTTAAGTGAAAGATTACGGCCTTTGCTTGATCTTCGTGTGTCTGTCACTGGTGGAGTTCACTTTGACCTTGTCAAGCGGGTTTTGCGGGACATTCAATGTGCTGGTCAAGAACCTGAAGAAATAATTCAACAAATCTCTGAAACGGTATATCCTATGTATAAGGCTTTTATTGAGCCAGATCTCCAAACAGCACATATAAAAATCACAAACAAGTTCAATCCATTCTCTGGGTTCCAGAATCCCACCTACATATTGAAGTCAACAAGGGCTGTGACAGTGGATCAAATCAATGTTATTATTGCTGCAGAACATACTGAAACCACAGAGGAAACATATGATATATATCTTCTACCACCTGGGGAAGATCCCGAAGCATGTCAATCATACTTGAGGATGAGAAACCGAGATGGAAAGTACAATCTTATGTTTGAGGAATGGGTTACAGACAGTCCATTCATAATATCTCCTAGAATTACTTTTGAGGTCAGTGTTCGCCTTCTTGGAGGGCTGATGGCCTTGGGGTACACAATTGCAGCTATCCTGAAAAGAAACAGCCATGTCTTTCGTGATGATAAAGTGTCTGTAAAAACTGATTGGTTGGAACAACTTAATCGCCTATATGTTCAGGTGCAAGGGAAAGATAGAAGCTATGTTAAATATGTGGCAGAAAACCTGGGGTTGGATGATTCTTATGTTCCTTGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTATAAATGATGTGATGGCACTGCCAGATGATCTGAAGACAAAACTCAGTATAGATGATGATTTGGTTTCGAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGCAATATTTCACACTCGTATTCAAATCAAAGAGATAAGAGTCTATCTAAGTTGACTAGATTAGCTATAAATAACAGATTTGATGGACGAGCTCTAGAATCACCTGCAGCAATTGCAAACCAAGGGGTCATTACCCAACTTTCTGAACAAATTTCTACACTAGATGAGAGAATGGATGAGTTTACATCCCGTATTGAAGAGCTGAATTCAAAGTTTGCAATCAGAAAAGTTTCAGCCAGTCAACAAAACTTAGCTTTACAGGCTGAAGCGTGCAATGGCTCAGGACCCACTTCTCTCTTCCTAACAGGGTTAGGTAATGGTTCTTTGGTTGGATCTCTATTGCCTAATTCTTCATCATCTTCCCAATTGGCAAGGGAGTCCCCCCTGATGGAAGAGGTTGCACTTGTTGCACGAGGACAACGTCAAATTATGCATCAACTAGACACTCTGAGCAATCTATTGCATGAATACTGTGGAGAGAGATCACGCCTAGGAAGAACAGACCAGAAAACCAGCATGCCTGAAGTTGACTTCATCACCATCCCGTTTGTCCTTACTTTGGCAATTGGTGCTGTGGGTGTCTTTTTGTTCAAAGGTTTGACATCCCAAAAATAA 2073 0.4105 MVSNNVSERKAYAGLVGIYKHIGWTSLLSLMAQDTASGAELPQRPSGLLRDQVQLVKRKDLDRYEIVSVHDSLSFEKGFFKVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGMSVQVPIYDFKSSSHIGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHFDLVKRVLRDIQCAGQEPEEIIQQISETVYPMYKAFIEPDLQTAHIKITNKFNPFSGFQNPTYILKSTRAVTVDQINVIIAAEHTETTEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRNSHVFRDDKVSVKTDWLEQLNRLYVQVQGKDRSYVKYVAENLGLDDSYVPCTYIEQIQLEKLINDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRNISHSYSNQRDKSLSKLTRLAINNRFDGRALESPAAIANQGVITQLSEQISTLDERMDEFTSRIEELNSKFAIRKVSASQQNLALQAEACNGSGPTSLFLTGLGNGSLVGSLLPNSSSSSQLARESPLMEEVALVARGQRQIMHQLDTLSNLLHEYCGERSRLGRTDQKTSMPEVDFITIPFVLTLAIGAVGVFLFKGLTSQK 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1034 690 Pfam CYTH domain 303 425 IPR023577 -
Glsi13g1034 690 CDD UMPK_like 98 270 - -
Glsi13g1034 690 Gene3D - 97 277 IPR027417 -
Glsi13g1034 690 ProSiteProfiles CYTH domain profile. 279 441 IPR023577 -
Glsi13g1034 690 PRINTS Uridine kinase signature 255 268 - -
Glsi13g1034 690 PRINTS Uridine kinase signature 219 229 - -
Glsi13g1034 690 PRINTS Uridine kinase signature 96 113 - -
Glsi13g1034 690 PRINTS Uridine kinase signature 163 178 - -
Glsi13g1034 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 269 IPR027417 -
Glsi13g1034 690 Coils Coil 530 557 - -
Glsi13g1034 690 PANTHER URIDINE KINASE 47 453 - -
Glsi13g1034 690 Pfam Phosphoribulokinase / Uridine kinase family 99 267 IPR006083 GO:0005524|GO:0016301
Glsi13g1034 690 SUPERFAMILY CYTH-like phosphatases 295 438 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1034 Glsi-ChrGlsi13 28415417 28423637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1034 98 267 PRT Gene Family AT1G55810 29.609 9.43e-17 81.6