Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1026 ATGCCTGGTCGTAGAAGAAGAAGGCACCACTTTAGCAGAATCCATGCATTCTCATGTGGGAAAGCTTCGTTCAATGGGGAGCATTCACTTATTGGAGGCCCTGGGTTCTCGAGGATAGTCTATTGCAACGATCCAGAACGTGTTGAAGCGAGCCTTTTGAATTATGATGACAATTACGTAAGAACTACTAAATACACACTTGCGTCGTTCCTACCCAAGTCCTTGTTTGAGCAATTCAGGAGGGTTGCAAATTTCTATTTTCTGGTCTGTGCAATTTTGTCTTTCTTCCCGGTTTCTCCTTACTCAGATGAGAGCAATGTTGTTCCTCTATTGGTTGTGGTTGCTGCTTCAATGGGGAAAGAGATCATTGAGGATTGGAGGCGGAAGAAGCAGGATATTGAGATGAATAACAGAAAGGTTAAAGTACATCATGGAGGAGGTGTTTTTGATTATTATAAATGGAGGGATCTGAAAGTTGGAGACATAGTCAAGGTGGAAAAAGATGAATTTTTTCCTGCTGATATCATCTTACTTTCATCAAGTTATGACGTTGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTTAAACTGAAACAAGCATTGGAAGAAACTTCAAAGTTGCAAGAAGACTCAAGCTTTCAAAATTTCAATGCTACCATCAAATGTGAAGATCCAAATGCAAATTTGTACTCGTTTATAGGAAGTTTGGAGCTTGAGGATCAACAATACCCTCTTGCGCCTCAGCAGCTATTGCTTAGGGACTCAAAGCTGAGGAACACAGATTTTATATATGGTGCGGTAATCTTCACAGGTCATGACACAAAGGTTATGCAGAATTCAACAGTTCCTCCTTCCAAGAGAAGCAAAATTGAGAAACGAATGGATAAAATAATCTACTTTCAATTTTTTGTACTATTCATGATTTCTTTTGTTGGGTCCGTTTTCTTTGGGATTTATACAAGGGAGGACCTTGAAAATGGTGTAATGAAAAGATGGTACCTTAGACCAGATAATACCACAATTTACTATGACCCAAAAAGAGCACCAATTGCAGCAATTTTGCATTTATTGACTGCGCTTATGTTGTATGGTTACTTGATTCCTATCTCCTTGTATGTGTCAATAGAAATTGTGAAAGTTCTTCAGAGCATTTTCATCAACCAAGATGTGCACATGTATTTTGAGGACACTGACAAGCCAGCCCATGCTCGTACTTCCAATTTGAATGAAGAACTTGGCCAAGTTGATACCATACTTTCGGATAAAACAGGAACTTTAACTTGCAATACTATGGAATTTATCAAGTGTTCCATTGCTGGGATTGCTTATGGACGGGGAGTTACAGAAGTTGAGGGAGTTCTAGCAAGGAGGAAAGGGTCACCTTTAGATCAAGAGTTGATAGAAGATGAACAGGTTTCAGAGATTGCTGAAGCAAAGCCATCCATTAAAGGGTTTAACTTTATGGATGAAAGGATTATGAATGGGAATTGGGTCAATGAGCCTCATGCAAAAGTAATCCAGAACTTCCTACGATTGCTGGCTGTATGCCATACTGTAATACCTGAAGTTGATGAAGAAACTGGTAAGGTTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTTGGGTTTGAGTTTTATGAGAGGACACAGACAACCATTTCACTGCGTGAGTTTGATCCTCTGTCTGGCAGGAAGGCTGAAAGATCCTACAAACTTTTAAATGTAATGGAGTTTAGTAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAGGGGAATCTACTGATACTTTCCAAAGGAGCTGACAGTGTCATGTTTGAAAGACTTGCAAAGAATGGAAAGGAGTTTGAAGAGAAGACTAAGGAGCATGTTAATGAGTATGCTGATGCTGGTCTAAGGACATTGATACTTGCATATCGTGAACTTGATGAGGAAGAGTACAACCAATTTAACAAAGAATTCATAGAAGCCAAGAACAGAGTGAGTGCAGATCGGGAGCAGATCGTCGAAGAAATAGCAGAAAAGATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAGTGCATCGACAAGCTAGCACAGGCTGGAATTAAGGTATGGGTTTTGACTGGTGATAAAATGGAGACAGCAATCAATATTGGATTTGCATGTAGTTTACTAAGACAAGGAATGAAGCAAATTATAATTAGCTCTGACACTCCAGAAGCCAAGTCACTGGAGAAAGTGGAGGACAAGTCTGCTGTTGCAGCGGCAATTAAGGAAAGTGTTCTTCATCAGATCAGGGAGGGAAATGAATTGCTTTCTATTTCAGACGAAAATTCAGTGGCATTAGCTCTGATCATTGATGGGAAGTCTCTAACATTTGCACTGGAAGATGATGTGAAGGACTTGTTTCTTGAACTTGCCATTGGCTGTGCATCTGTTATATGCTGTCGTTCATCTCCCAAACAGAAAGCACTTGTTACAGGGCTGGTTAAGACAAAAACTGGTCGTACAACTCTAGCAATTGGTGATGGGGCAAATGATGTTGGTATGCTCCAAGAAGCAGACATCGGAATTGGTATAAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGTGACATTGCAATTGCCCAATTTCGGTTTTTAGAGCGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCATCCATGATCTGCTACTTCTTTTACAAGAATATTGTATTTGGCTTCACTCTCTTCTTCTTTGAGATGTATGCATCATTCTCTGGGGAAGCAGCTTACAACGATTGGTTCCTGTCCCTATATAATGTGTTCTTCACTTCACTTCCTGTGGTTGCCTTAGGAGTGTTTGATCAGGATGTCTCTGCTAAATTATGTCTCAAGTTTCCATTATTATACCAAGAAGGTGTGCAAAATGTCCTATTTAGCTGGAAAAGAATCCTTGCTTGGGAATTCAATGGAGTGTTGAGTGCTACCCTGATATTCTTCTTCTGCGTCGGTGCAATGGAGCATCAAGCCTTCCGAAAAGGCGGGGAAGTTGTGGGGCTAGAAGTCCTGGGTGCCACCATGTACACTTGTGTTGTGTGGGTGGTCAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTGCATACAGCATATTTTCATCTGGGGTGGCATTCTCTTGTGGTATTTATTCCTCCTAGCATACGGAGCCATGGACCCCTCCATATCCACAACTGCCTACAAGGTCTTCATTGAAGCTTGTGCACCTGCCCCTTCTTACTGGCTCATCACTTTGCTTGTTCTTGTCTCCTCCTCCTTTCCGTATTTCATCTGTGCTTCCATCACAATGCGGTTTTTCCCCACTTACCATCAAATGATTCAGTGGATAAGGAATGATGGGCAAACAAATGATCCAGAATACTGTAATGTGGTAAGACAGAGATCTATACGATATACAACCGTTGGGTGCACAGCTCGTTTTGAAGCGTCTAAACGCTTTGAAGAGAAGCCTGAGAACCCTTAA 3582 0.4098 MPGRRRRRHHFSRIHAFSCGKASFNGEHSLIGGPGFSRIVYCNDPERVEASLLNYDDNYVRTTKYTLASFLPKSLFEQFRRVANFYFLVCAILSFFPVSPYSDESNVVPLLVVVAASMGKEIIEDWRRKKQDIEMNNRKVKVHHGGGVFDYYKWRDLKVGDIVKVEKDEFFPADIILLSSSYDVAICYVETMNLDGETNLKLKQALEETSKLQEDSSFQNFNATIKCEDPNANLYSFIGSLELEDQQYPLAPQQLLLRDSKLRNTDFIYGAVIFTGHDTKVMQNSTVPPSKRSKIEKRMDKIIYFQFFVLFMISFVGSVFFGIYTREDLENGVMKRWYLRPDNTTIYYDPKRAPIAAILHLLTALMLYGYLIPISLYVSIEIVKVLQSIFINQDVHMYFEDTDKPAHARTSNLNEELGQVDTILSDKTGTLTCNTMEFIKCSIAGIAYGRGVTEVEGVLARRKGSPLDQELIEDEQVSEIAEAKPSIKGFNFMDERIMNGNWVNEPHAKVIQNFLRLLAVCHTVIPEVDEETGKVSYEAESPDEAAFVIAAREFGFEFYERTQTTISLREFDPLSGRKAERSYKLLNVMEFSSARKRMSVIVRDEEGNLLILSKGADSVMFERLAKNGKEFEEKTKEHVNEYADAGLRTLILAYRELDEEEYNQFNKEFIEAKNRVSADREQIVEEIAEKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKVWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPEAKSLEKVEDKSAVAAAIKESVLHQIREGNELLSISDENSVALALIIDGKSLTFALEDDVKDLFLELAIGCASVICCRSSPKQKALVTGLVKTKTGRTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFEMYASFSGEAAYNDWFLSLYNVFFTSLPVVALGVFDQDVSAKLCLKFPLLYQEGVQNVLFSWKRILAWEFNGVLSATLIFFFCVGAMEHQAFRKGGEVVGLEVLGATMYTCVVWVVNCQMALSISYFTCIQHIFIWGGILLWYLFLLAYGAMDPSISTTAYKVFIEACAPAPSYWLITLLVLVSSSFPYFICASITMRFFPTYHQMIQWIRNDGQTNDPEYCNVVRQRSIRYTTVGCTARFEASKRFEEKPENP 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1026 1193 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 1151 - -
Glsi13g1026 1193 FunFam Phospholipid-transporting ATPase 116 286 - -
Glsi13g1026 1193 NCBIfam HAD-IC family P-type ATPase 828 945 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi13g1026 1193 SFLD Haloacid Dehalogenase 406 913 - -
Glsi13g1026 1193 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 700 IPR023299 GO:0000166
Glsi13g1026 1193 Gene3D - 120 287 - -
Glsi13g1026 1193 SUPERFAMILY Calcium ATPase, transduction domain A 141 284 IPR008250 -
Glsi13g1026 1193 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Glsi13g1026 1193 Gene3D - 694 902 IPR023214 -
Glsi13g1026 1193 Pfam Phospholipid-translocating ATPase N-terminal 40 103 IPR032631 -
Glsi13g1026 1193 SUPERFAMILY HAD-like 419 917 IPR036412 -
Glsi13g1026 1193 FunFam Phospholipid-transporting ATPase 540 698 - -
Glsi13g1026 1193 SFLD p-type atpase 406 913 IPR044492 -
Glsi13g1026 1193 Pfam Cation transport ATPase (P-type) 531 624 - -
Glsi13g1026 1193 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Glsi13g1026 1193 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Glsi13g1026 1193 PRINTS P-type cation-transporting ATPase superfamily signature 748 758 - -
Glsi13g1026 1193 FunFam Phospholipid-transporting ATPase 698 902 - -
Glsi13g1026 1193 Coils Coil 655 675 - -
Glsi13g1026 1193 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1140 IPR023298 -
Glsi13g1026 1193 NCBIfam phospholipid-translocating P-type ATPase 55 1147 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Glsi13g1026 1193 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1141 IPR032630 -
Glsi13g1026 1193 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Glsi13g1026 1193 Gene3D - 562 671 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1026 Glsi-ChrGlsi13 28378648 28384897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1026 10 1185 Primary Pumps ATPases AT1G68710 70.730 0.0 1803
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1026 13 28378648 28384897 Glsi13g1026 13 28378648 28384897 ECH