Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1023 ATGCGCTTCGGGGCCTATTCAGGTTCATCTTCCTCCTGGGTTCGACCCGGTAAAAGGATGGAGCCGATGGACATCGTTGGGAAATCAAAGGAAGATGCTTCCCTCCCCAAAGCAACCATGACAAAAATTATTAAAGAGATGTTACCCCCTGACGTACGCGTTGCACGAGATGCTCAAGATCTGTTGATTGAGTGTTGTGTTGAGTTTATAAACCTTGTTTCATCAGAGTCCAATGAAGTCTGTAACAGAGAGGATAAACGGACAATTGCACCAGAGCATGTATTGAAGGCTTTAGAGGTTCTTGGATTTGGTGAGTACATTGAGGAAGTTTATGCAGCATACGAGCATCATAAGATTGAGACCATGGACTCTTTAAGAGGTGGCAAGTGGAGCAATGGAGCTGAAATGACTGAGGAAGAAGCATTAGTGGAACAGCAAAGGATGTTTGCAGAGGCGCGTGCTAGAATGAACGGTGGGGCTATTGCTTCCAAGCAGCCAGATGCTGACCAAACTTTAGAGAGTTAA 525 0.4552 MRFGAYSGSSSSWVRPGKRMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEHHKIETMDSLRGGKWSNGAEMTEEEALVEQQRMFAEARARMNGGAIASKQPDADQTLES 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1023 174 PANTHER PROTEIN DR1 HOMOLOG 20 173 IPR044255 -
Glsi13g1023 174 SUPERFAMILY Histone-fold 31 161 IPR009072 GO:0046982
Glsi13g1023 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 98 IPR003958 -
Glsi13g1023 174 Gene3D Histone, subunit A 23 161 IPR009072 GO:0046982
Glsi13g1023 174 FunFam Negative cofactor 2 beta 25 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1023 Glsi-ChrGlsi13 28323116 28327495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1023 20 171 CCAAT-DR1 Transcription Factor Family AT5G23090 83.660 2.88e-91 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi13g1023 CBFD_NFYB_HMF 4.9e-22 CL0012