Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1011 ATGTTTCCTTCGAACACTTACCACAACGGCTATGACCAAGTCTCCAATTCTGACCAAGCATCTTTCTCTAAGCCTTTTCCCTTTGACACCAACCTAACTTCCAAGCAAGAAAGCCTTCCTCCTCCTCCTCCACCTTTGTCCTTTTTCCATTTCCCTTCCTTTGAAGAAAACGAGATTTTCCTCCAACAAAACCATGACCTTTTATTTCATCATCATCAATCTCTACCCGAGGCTGCTTTTAACATGGAGGTGTCAACCAAGACTCAGATCCCAAGGAAAAGGTCTTGCAAGAGAGATCGGCACAGCAAGATCAACACGGCAAGAGGGCTAAGGGATCGGAGAATGAGACTGTCCCTTGAAGTTGCTAGGAGGTTTTTTGGCCTTCAAGACATGCTAGGCTTTGACAAAGCCAGCAAGACCGTGGAGTGGCTACTTAATCAATCAAAAGACGAAATCAAGCAGCTAGCAATAGAGAAGAACATCCACCCCGTGAAGAGTGCATCTTCAACTTCAGAATGCGAAGGGTTATCTGGGTTGGACGAGGTTGCATTAAGTGGCAATATTCGAGAACAACAAGGACAAGGACAAGGACAACCTTTAGTGAAGAGAAGGATGAAAATGAAACCTACTCGAAAGAGTGCATTTCACCCTCTTGCTAGGGAGTCAAGGGAAAAGGCAAGGAAAAGGGCAAGAGAGAGGACTGAAATGAATAAGAGTCGCAAACTTGCTGATGAATCAAACAAATGCAGTGAGGCAATTACAAACCATAACTTCAGCCAATTTGGGTCCTGGAATCCCTTTGAAACGGGAGAAGAATCTGGTACCCAGAGCCAAAAGGTAAATCCCTCCTTGGATGTGGTGGCTGAGGCTGAAGAACGAAGCTCTCACGCAAAATGGAGCCCATCCATGATTTTCAGCTCATTGAATAACTCAGGATTCCTACAAGAACATCAATTTGCAGAATTTCAGTCCTTGGCAAAACTTTGGGAGGCCTACAACAATCACATCTAA 1011 0.4461 MFPSNTYHNGYDQVSNSDQASFSKPFPFDTNLTSKQESLPPPPPPLSFFHFPSFEENEIFLQQNHDLLFHHHQSLPEAAFNMEVSTKTQIPRKRSCKRDRHSKINTARGLRDRRMRLSLEVARRFFGLQDMLGFDKASKTVEWLLNQSKDEIKQLAIEKNIHPVKSASSTSECEGLSGLDEVALSGNIREQQGQGQGQPLVKRRMKMKPTRKSAFHPLARESREKARKRARERTEMNKSRKLADESNKCSEAITNHNFSQFGSWNPFETGEESGTQSQKVNPSLDVVAEAEERSSHAKWSPSMIFSSLNNSGFLQEHQFAEFQSLAKLWEAYNNHI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1011 336 ProSiteProfiles R domain profile. 220 238 IPR017888 -
Glsi13g1011 336 MobiDBLite consensus disorder prediction 1 42 - -
Glsi13g1011 336 Pfam TCP family transcription factor 97 240 IPR017887 -
Glsi13g1011 336 MobiDBLite consensus disorder prediction 1 36 - -
Glsi13g1011 336 ProSiteProfiles TCP domain profile. 97 155 IPR017887 -
Glsi13g1011 336 MobiDBLite consensus disorder prediction 188 247 - -
Glsi13g1011 336 MobiDBLite consensus disorder prediction 214 247 - -
Glsi13g1011 336 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 83 330 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1011 Glsi-ChrGlsi13 28198542 28199864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1011 93 234 TCP Transcription Factor Family AT3G18550 45.912 5.74e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Glsi13g1011 TCP 1.4e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g1011 13 28198542 28199864 Glsi13g1011 13 28198542 28199864 ECH