Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1007 ATGTCATCAAGTGGAATCGTTTGGAGCTATGAAGAAGAAAAGGCATTTGAGAATGCCATCGCTGTGCATTGGATTGATGAAGATTCAAAAGAGCAATGGGAGAAGATTGCTTCAGCGGTTCCCAGCAAAACCATGGAGGAAGTGAAGCAACATTACCAAATTCTAGTAGAGGATGTAAGTGCAATAGAAGCAGGCCATATACCATTTCCCAATTATGCTGGAGAGGAAGCAACATCTTCAAACAAGGATTTGCATGGTTCTTCTTCCAAGGCTTCAACTTCGGATAAGAAATCTAATTGTAATTATAGAAGTGGGTTTTCGGGGTTAGCACATGAATCCACTGGGCATAGTGGTAAAGGAGGCTCTTCAAGATCATCGGAACAAGAGAGGCGAAAAGGGATTCCATGGACTGAAGAAGAGCATAGGTTATTTCTACTGGGTCTTGACAAGTTTGGAAAGGGAGATTGGAGAAGCATTTCACGGAACTTTGTGATGTCTAGGACCCCAACTCAGGTGGCAAGCCATGCACAGAAGTACTTTATTCGGTTGAACTCCATGAATAGAGACAGAAGGAGGTCTAGTATCCATGATATTACCAGCGTGAACAATGGAGATGTGGCCAGCAACCAGGCACCAATAACAGGGCAGCACACCAGCACAAACCCATCAAGCACCATGGCTGTAGGACAATCAGTGAAGCATAGAGCTCAACCCCATATACCTGCTGGTTTAGGCATGTATGGAGCACCAGTTGGGCATCCAGTAGCTGCTCCTCCAGGGCATATGGCATCTGCGGTTGGAACCCCTGTCATGCTTCCTCCTGGACCCCATGCCCATCCTCATCCCTCTTATGTTGTCCCACTTGCTTATCCTATGCCATCTCCAACAATGCACCGATAA 900 0.4611 MSSSGIVWSYEEEKAFENAIAVHWIDEDSKEQWEKIASAVPSKTMEEVKQHYQILVEDVSAIEAGHIPFPNYAGEEATSSNKDLHGSSSKASTSDKKSNCNYRSGFSGLAHESTGHSGKGGSSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHTSTNPSSTMAVGQSVKHRAQPHIPAGLGMYGAPVGHPVAAPPGHMASAVGTPVMLPPGPHAHPHPSYVVPLAYPMPSPTMHR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1007 299 Pfam Myb-like DNA-binding domain 8 53 IPR001005 -
Glsi13g1007 299 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Glsi13g1007 299 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Glsi13g1007 299 CDD SANT 8 53 IPR001005 -
Glsi13g1007 299 MobiDBLite consensus disorder prediction 74 122 - -
Glsi13g1007 299 PANTHER TRANSCRIPTION FACTOR KUA1 4 295 - -
Glsi13g1007 299 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Glsi13g1007 299 FunFam transcription factor MYB1R1 134 185 - -
Glsi13g1007 299 CDD SANT 135 180 IPR001005 -
Glsi13g1007 299 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Glsi13g1007 299 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Glsi13g1007 299 Gene3D - 134 186 - -
Glsi13g1007 299 MobiDBLite consensus disorder prediction 73 135 - -
Glsi13g1007 299 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Glsi13g1007 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Glsi13g1007 299 FunFam Transcription factor SRM1 1 69 - -
Glsi13g1007 299 Gene3D - 2 69 - -
Glsi13g1007 299 SMART sant 4 58 IPR001005 -
Glsi13g1007 299 SMART sant 132 182 IPR001005 -
Glsi13g1007 299 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1007 Glsi-ChrGlsi13 28170882 28171962 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi13g1007 Myb_DNA-binding 8e-06 CL0123