Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0995 ATGCCAATCCAAGTGTCAAGAAAAAAAATATCAAAGAATAGGTTGCTCTGGTCTGCCAAGGATCCGTCTAGCAGGCATGTGTTGACGGGCATGCTGTGGGTTTCTTGTGGCATGATTGCATCTGTTGTCAGGCTTGATTCCTACACAGTCTTGCTGATTTGTGTGTGTGTGTGTGTTTTTGGGGGTGGGTTGGGGAACAGGTTAGATGCGTATATCTTGGATTATCTCCAGAAGCAAAATTTACATATTTCTGCATGGTCATTTCAGGCTGAAGCGGATGTCCAAACAAGTAGTGTTGATATAGATGATCCCAATGGTTTTCTTCTTCAGTTTTGGTCTTCTTTCCGGGACGTATATGCTGTCGTTGTAGAAAAGAAGCGCTTAGAAGAAGCTGCAACAGCAGCTCAAAGCGAGGGACAACAAATTGAGGATCGAGAGCAGCATCTGCATGAGCTTTATCAGAAGTCAATCGAGCCTTTATTGCAAGAGCAGCAACATATGGTCTCAATTCGCAAGCTATTAAATTCTATTTGCAGGCAAACAATGCCCGGTGCACCTTCTAGTGTTTTACAGGGGAATCCTCAAAACTTTCAAAATTGGCATCAGCAATATTTGGGGTCTGGACAATCTGCTCTGAATTTGCAAACATTGTACGGAGCACCTTCCAGTGGTTTACAAGAGAATTTTCAAAACTTTCAAAATAAAAATCAGCAATATCTGGTGTTTGGACAAATTGATATGGACGGTCTCGTGGGTGATGGATCTTTGTGTGTCAGTGATAGTGTTCTTGAAGGATTCACACTTGAGGAAATCCAACTTATAGTAGAATTTGAAAAAATGGATTGCTGTCACTTCTCACCTGATGGAAAATTGCTTGCTATGGGTGGTCACAATAAACTGGTTTCATTGTATAGCACTTCATCAAATTGGCCAGTGCCATTTGAATTCAGCTTATTAGTTGGAGTGCACTATGATTGGATAACTGATGTCCGATTTAGTCCAAGCATGCCACGCATTATTGCTACATCCTCAGCTGACAAAAATGTTAATATCTGGGATGTTGATTCTGTTAGTCCTGATCTTCATTTACATAGGTCAAATCCTCATGTTCCACGGTATTCATTCACTGACCATTCAGAAACTGTGTTGACTCTGGACTTTCACCCTGGTAAAGAGGACCTTTTGTTCTCTAGTGATTATCGTGTGATAAGATGCTGGAATATTTCCGATGCCGATGGTGAATGTACATTAAGTTCTAGGCCTTCCAAGCTTGGTATAAATCAGATCAGATTTGAACCCTCTACGGGAAAGTATCTTGCTGTTGCAGCAAATAATTTCATAATTATTCTTGATGGAGAAACTCTGGTTGACAAAGATTATTTCAAGGGCCACATAAAAGATGTTCATTCTGTGTGCTGGCATTCCTCTGGAGAATTTCTGGCATCTGTGAGTGATGACTCGGTTAGAGTCTGGAGAGTTAGTGAGGGAAAATGCGTTTATAAGTTGGAAACAAATGGCAAGAAATTCAACACCTGTGTTTTCCATCCGTCCCATGATTGTTTGTTAATCATTGGCTGCCATAAGACTTTTGAGATCTGGCACTTCCTTCAAAACAAGTTAATCTCTATGCCTGCACATGGCGATCTTGTATCTTGCTTGGCAGTATCAAATGTTACTGGGTTTGTGGCTTCAGCTAGTCATGACAAGCATGTTAAGTTGTGGAAGTGA 1728 0.4097 MPIQVSRKKISKNRLLWSAKDPSSRHVLTGMLWVSCGMIASVVRLDSYTVLLICVCVCVFGGGLGNRLDAYILDYLQKQNLHISAWSFQAEADVQTSSVDIDDPNGFLLQFWSSFRDVYAVVVEKKRLEEAATAAQSEGQQIEDREQHLHELYQKSIEPLLQEQQHMVSIRKLLNSICRQTMPGAPSSVLQGNPQNFQNWHQQYLGSGQSALNLQTLYGAPSSGLQENFQNFQNKNQQYLVFGQIDMDGLVGDGSLCVSDSVLEGFTLEEIQLIVEFEKMDCCHFSPDGKLLAMGGHNKLVSLYSTSSNWPVPFEFSLLVGVHYDWITDVRFSPSMPRIIATSSADKNVNIWDVDSVSPDLHLHRSNPHVPRYSFTDHSETVLTLDFHPGKEDLLFSSDYRVIRCWNISDADGECTLSSRPSKLGINQIRFEPSTGKYLAVAANNFIIILDGETLVDKDYFKGHIKDVHSVCWHSSGEFLASVSDDSVRVWRVSEGKCVYKLETNGKKFNTCVFHPSHDCLLIIGCHKTFEIWHFLQNKLISMPAHGDLVSCLAVSNVTGFVASASHDKHVKLWK 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0995 575 Gene3D - 452 575 IPR015943 GO:0005515
Glsi13g0995 575 Coils Coil 125 145 - -
Glsi13g0995 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 356 - -
Glsi13g0995 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 356 IPR001680 GO:0005515
Glsi13g0995 575 ProSitePatterns Trp-Asp (WD) repeats signature. 340 354 IPR019775 -
Glsi13g0995 575 Pfam WD domain, G-beta repeat 322 353 IPR001680 GO:0005515
Glsi13g0995 575 Pfam WD domain, G-beta repeat 539 575 IPR001680 GO:0005515
Glsi13g0995 575 Pfam WD domain, G-beta repeat 461 491 IPR001680 GO:0005515
Glsi13g0995 575 SMART Lish 64 96 IPR006594 GO:0005515
Glsi13g0995 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Glsi13g0995 575 Gene3D - 268 451 IPR015943 GO:0005515
Glsi13g0995 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 461 501 IPR001680 GO:0005515
Glsi13g0995 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Glsi13g0995 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 416 IPR001680 GO:0005515
Glsi13g0995 575 CDD WD40 282 575 - -
Glsi13g0995 575 SUPERFAMILY WD40 repeat-like 236 575 IPR036322 GO:0005515
Glsi13g0995 575 ProSiteProfiles LIS1 homology (LisH) motif profile. 64 96 IPR006594 GO:0005515
Glsi13g0995 575 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 66 217 IPR044716 GO:0003714
Glsi13g0995 575 SMART WD40_4 313 353 IPR001680 GO:0005515
Glsi13g0995 575 SMART WD40_4 412 451 IPR001680 GO:0005515
Glsi13g0995 575 SMART WD40_4 270 305 IPR001680 GO:0005515
Glsi13g0995 575 SMART WD40_4 368 407 IPR001680 GO:0005515
Glsi13g0995 575 SMART WD40_4 454 492 IPR001680 GO:0005515
Glsi13g0995 575 SMART WD40_4 536 575 IPR001680 GO:0005515
Glsi13g0995 575 SMART WD40_4 495 534 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0995 Glsi-ChrGlsi13 28076373 28083736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0995 375 574 Miscellaneous Gene Families AT5G08390 25.980 1.09e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Glsi13g0995 WD40 0.0007 CL0186