Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0994 ATGGCAACTCCGTTGACTATCTTGAGTGATGTGAAAGGTGGGTTTTCTCTGCCTGAGAATGGAAGAATCTGTGCAATCCGAAGCAAGTTGCAGAGTCCAAATGTTGCTGTTGCAGCGCTTTCACGAATCAATCAAACTCCGAGGAATTCTCAAGTTTTGTGCAAAGCTATGGCAGACGTATCAGGAGATATTCCTGAAAGTGCTGATGGGATGAGCCAGTTTGAGAGAATAGACCTTTTTACCCTTGGCTTGGGTTTCCTTATGCTGTCTATGGGCTTGACATTGACATTTGAGGATTTCAGACGATATCTGCGAAATCCATGGACTGTGGGTGTAGGATTTCTTGCACAATATTTGATTAAACCCATGTTAGGCTTTGCCATTGCAACGACTCTAAAGCTTTCGGCTCCTCTTGCAACTGATCTTATTCCAGTCTCATGCTGCCCTGGAGGTCAGGCATCAAATGCTGCTACATACATATCCAAGGGAAATGTTGCACGACAACGGTATGATGCTGAATCATTTATTGGATCTATACTCATATTTGCCATTTGCATTTGTGAGTGTTCATCTATTGGAGCTATTGTCATGACGCCACTCCTCAAAAAGCTTCTTGCTGGTCAACTTGTTCCAGTTGATGCTGCTGTTCCACTCAATCCATTCGCGAGCAGTCTTCCAGAAAAACTCTTGGCAGTGAATGAGGTTTTTACTTCAGTGTTGATGATGTTTTCAGCTTCTTGGTTATATTATCTTTTCTTTTCTCTTTTGAATTATTTTTCTGAATGGGCATGTGTTGACGCCTTGACGGGCATGCATGCTGTGGGTTTTTTGTTTAAGATAGCTGCATCTGTTGTCAGGTTAGATGCGTATATCTTGGATTATCTCAAGAAGAAAAATTTACATCACTCTGCAAGTTTATTTCAGGCTGAAGGAAATGTCCAAACAAGTAGTGTTGCTATAGATGAACCTCGTGGTTTTCTTCTTGATTTTTGGGCTTTCTTCTGGGACGTATATTCTGGCCGCGTAGAAGAGAAGCGCCTAGAAGAGGCAGCAGCAGCAGCAGCTCAGATTGAGGATAGTATATTGTTGGAAGATCCAGGAGCAACAACTGGTGGACAGCCTGCATGGCAAACATTGTCCGAAGCACCTTCCGGTGTTTTACAAGAGAATTTTCAAAACTTTGAAAATCAGAATCAGCAGCATCTGGAGTCTAAACAATCTGATATGGACGGTCTTGTGGGCGATGGATCTTTGTGTGTCGGTGATAGAGTTCTTGAAGGATTCACACTTGAGGAAATCCAATTTATAATGGAATCTGGTACATTGGCTTGCTGTCACTTCTCACCTGATGGAAAGTTGTTTGCTACTGGCCACAGTAAAATGGCTTCATTGTATGGCCATTTGTCAAATTTGCTAGTGTCGCCAGTGCCATTTGAATTCAAGTTCATAATTGGAGTGCATTCTCAGTGGATAACTGATGTCCGATTTAGTCCAAGCTTGCCTTGCGTTATTGCTACAGCCTCAGCTGACAAAACTCGTTCTTCTCCACAATGTTCATTCACAGGACATTCAGAAACTGTGTTGACACTGGACTTTCACCCTGGTAAAGTGGACCTTTTGCTCTCTAGTGATTATAGTGCGATAAGATGCTGGAATATTACCAATCGTGAATGCACCATGGTTAAGGTTTCCAAGATCAGATTTGAACCATCTAGTGGAAAGCTTCTTGCTGTTGCATCAAATAATTTGATAGTTATTCTTGATGGAGAAACCCTGATTATAAAAGATGAATTCAAGGGGCACATAAAAGATGTTCATTCTGTGTGCTGGGATTCCTCTGGAGAATTTCTAGCATCTGCGAGTGATGACTCAGTTAGAGTCTGGAGAGTTAGTGAAGGGAAATGCGTTTATAAGTTGGAAACAAATGAAAAGAAATTCAACACCTGTGCTTTCCATCCGTCCCATGATTGTTTGTTAATCATTGGCTGCCATAAGACTCTTGAGATCTGGAACTTCCTTCAAAACAAGTTATTCTCCATACCTGCACATGACAATCTTGTATCTTGCTTGGCGGTATCAAATGTTGGTGGTTTCATGGCTTCAGATATAGATGATCCTGATGGTTTTCTTCAGTTTTGGTCTTTTTTCTGGGACGTATATTCTGCTCTCATGGAAATGAAGGGCTTGGAAGAAGCAGCAAGAGCAGCTCAGATCGAGAGACAACAAATTAAGGATCCAGAGCAGCATCTGCATGAGCTTTATCAGAAGTCAATCCGGCCTTTATTGCAAGAACAGCAACGTATGGAGCAACAATTGGTGGACAGCTTACATGGTGGCCCTTTGCTTATAATTATTATTCAGTTATCTTATTCTGTATACTTCTCTATATCTCGTCTCAATTCGCAAGCTGTTAAACGCTATTTGCAGGCAAACATTGTCCGGCAAGCATTGCCTGGAGCACCTTTTGGTGTTTTACAGGAGAATTTTCAAAACTTCCAATATCAGAATCAGCAACATCTGGAGTATGGACAAGCTTATATGAACGATCTTGTGGGTGATGGATCTTTGTGTATCAGTGATAGTGTTCTCGAAGGATTCACACCTGAGGAAGTCCAACTTATAACAGAATTTGAAAACATGGATTGCTGTCACTTCTCACCTGATGGAAAATTGCTTGCTACTGGTGGCCACAATAAAATGGCTTCATTGTATAGCCACTGCTCGTATTGGCCAGTGCCATTTAAGTTCAATTTCATAGTTGGAGTGCACTATGAATGGATAACTGATATCCGATTTAGACCAAGCATGCCACGCATTATTGCTACATCCTCAGCTGACAAAACTGTTAAAATCTGGAATGTTGATACTCCTCGTCCTCCATCTTATTCATTCACTGGACATTCAGAAACTGTGTTGACACTGGACTTTCACCCTGGTAAAGTGAACCTTTTGTTCTCTAGTGATTATCGCGTGATAAGATGCTGGAATATTACCAATCGTGAATGTACCATAGTTAAGGTTTCCAAGATCAGATTTGAACCCTCCATTGGAAAGTTTCTTGCCGTTGCAGCAAATAATTTCATATGTATTCTTGATGGGGAAACCCTGGCTGAAAAAGATCTATTCGAGGGGCACATAAAAGATGTTCATTCTGTGTGCTGGCATTCATCTGGAGAATTTCTGGCATCTGTGAGTGATGACTCGGTTAGAGTCTGGAGAGTTAGTGAAGGGAAATGCGTTTATAAGTTGGAAACAATTGGCAAGAAATTCAACACCTGTGTTTTCCATCCATCCCATGATTGTTCGTTAATCATTGGCTGCCATAAGACTCTTGAGATCTGGAACTTCCTTCAAAACAAGTTAATCTCTGTGCCTGCACATGACGGTCTTGTATCTTCCTTGGCAGCATCAAATGTTACTGGGACTGGGTTTGTGGCTTCAGCCAGTCATGACAAGCATGTTAAGTTGTGGAAGTGA 3477 0.4156 MATPLTILSDVKGGFSLPENGRICAIRSKLQSPNVAVAALSRINQTPRNSQVLCKAMADVSGDIPESADGMSQFERIDLFTLGLGFLMLSMGLTLTFEDFRRYLRNPWTVGVGFLAQYLIKPMLGFAIATTLKLSAPLATDLIPVSCCPGGQASNAATYISKGNVARQRYDAESFIGSILIFAICICECSSIGAIVMTPLLKKLLAGQLVPVDAAVPLNPFASSLPEKLLAVNEVFTSVLMMFSASWLYYLFFSLLNYFSEWACVDALTGMHAVGFLFKIAASVVRLDAYILDYLKKKNLHHSASLFQAEGNVQTSSVAIDEPRGFLLDFWAFFWDVYSGRVEEKRLEEAAAAAAQIEDSILLEDPGATTGGQPAWQTLSEAPSGVLQENFQNFENQNQQHLESKQSDMDGLVGDGSLCVGDRVLEGFTLEEIQFIMESGTLACCHFSPDGKLFATGHSKMASLYGHLSNLLVSPVPFEFKFIIGVHSQWITDVRFSPSLPCVIATASADKTRSSPQCSFTGHSETVLTLDFHPGKVDLLLSSDYSAIRCWNITNRECTMVKVSKIRFEPSSGKLLAVASNNLIVILDGETLIIKDEFKGHIKDVHSVCWDSSGEFLASASDDSVRVWRVSEGKCVYKLETNEKKFNTCAFHPSHDCLLIIGCHKTLEIWNFLQNKLFSIPAHDNLVSCLAVSNVGGFMASDIDDPDGFLQFWSFFWDVYSALMEMKGLEEAARAAQIERQQIKDPEQHLHELYQKSIRPLLQEQQRMEQQLVDSLHGGPLLIIIIQLSYSVYFSISRLNSQAVKRYLQANIVRQALPGAPFGVLQENFQNFQYQNQQHLEYGQAYMNDLVGDGSLCISDSVLEGFTPEEVQLITEFENMDCCHFSPDGKLLATGGHNKMASLYSHCSYWPVPFKFNFIVGVHYEWITDIRFRPSMPRIIATSSADKTVKIWNVDTPRPPSYSFTGHSETVLTLDFHPGKVNLLFSSDYRVIRCWNITNRECTIVKVSKIRFEPSIGKFLAVAANNFICILDGETLAEKDLFEGHIKDVHSVCWHSSGEFLASVSDDSVRVWRVSEGKCVYKLETIGKKFNTCVFHPSHDCSLIIGCHKTLEIWNFLQNKLISVPAHDGLVSSLAASNVTGTGFVASASHDKHVKLWK 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 638 IPR001680 GO:0005515
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 520 561 IPR001680 GO:0005515
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 964 1005 IPR001680 GO:0005515
Glsi13g0994 1158 Pfam WD domain, G-beta repeat 1042 1072 IPR001680 GO:0005515
Glsi13g0994 1158 Pfam WD domain, G-beta repeat 922 953 IPR001680 GO:0005515
Glsi13g0994 1158 Pfam WD domain, G-beta repeat 597 628 IPR001680 GO:0005515
Glsi13g0994 1158 Pfam WD domain, G-beta repeat 1121 1158 IPR001680 GO:0005515
Glsi13g0994 1158 Pfam WD domain, G-beta repeat 960 996 IPR001680 GO:0005515
Glsi13g0994 1158 Gene3D - 850 1007 IPR015943 GO:0005515
Glsi13g0994 1158 Gene3D - 406 561 IPR015943 GO:0005515
Glsi13g0994 1158 Gene3D - 562 728 IPR015943 GO:0005515
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 1042 1082 IPR001680 GO:0005515
Glsi13g0994 1158 Gene3D - 1008 1158 IPR015943 GO:0005515
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1124 1158 - -
Glsi13g0994 1158 CDD WD40 882 1158 - -
Glsi13g0994 1158 Pfam Sodium Bile acid symporter family 81 216 IPR002657 GO:0016020
Glsi13g0994 1158 SUPERFAMILY WD40 repeat-like 881 1158 IPR036322 GO:0005515
Glsi13g0994 1158 Gene3D - 64 251 IPR038770 -
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 920 956 - -
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 1124 1158 IPR001680 GO:0005515
Glsi13g0994 1158 ProSiteProfiles Trp-Asp (WD) repeats profile. 920 962 IPR001680 GO:0005515
Glsi13g0994 1158 ProSiteProfiles LIS1 homology (LisH) motif profile. 283 315 IPR006594 GO:0005515
Glsi13g0994 1158 SMART WD40_4 429 466 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 913 953 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 1035 1073 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 477 512 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 591 629 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 632 671 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 555 588 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 673 714 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 1076 1115 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 513 552 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 870 905 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 957 996 IPR001680 GO:0005515
Glsi13g0994 1158 SMART WD40_4 1117 1158 IPR001680 GO:0005515
Glsi13g0994 1158 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 286 383 IPR044716 GO:0003714
Glsi13g0994 1158 CDD WD40 444 714 - -
Glsi13g0994 1158 ProSitePatterns Trp-Asp (WD) repeats signature. 940 954 IPR019775 -
Glsi13g0994 1158 SUPERFAMILY WD40 repeat-like 434 714 IPR036322 GO:0005515
Glsi13g0994 1158 SMART Lish 283 315 IPR006594 GO:0005515
Glsi13g0994 1158 Pfam LisH 286 311 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0994 Glsi-ChrGlsi13 28059551 28075443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0994 28 236 Organic Solute Cotransporters AT2G26900 55.328 3.40e-64 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Glsi13g0994 SBF 2.4e-25 CL0064