Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0993 ATGGCGTTGATTTTTGACGCTTGGAGTGTGATGATTCTCGTCTTCTTTTCACTTCTGCAAATGAGTTGGCGAGTCCATACAGAGCCGACTCAGGACAAGCAAGCCCTCCTTGCTTTCATCTCTCAGACTCGACACGCTAATCGGGTCCAATGGAACGCATCCGACTCGGCCTGCAACTGGGTCGGTGTCAAATGCGATGCTGCTCGTTCCTTTGTTTATTCTCTTCGTCTTCCCGGTGTTGGCCTTGTGGGTAGGATTCCGCCCGACACAATCGGTCGTCTCACTCAGCTACGAGTCCTCAGTCTCCGCTCTAATGGTCTCGTCGGCGAGATCCCCGCCGATTTATCCAATTTGACGTCTCTTCGTAACATCTACCTCCAGGATAACGATCTCTCCGGCGAATTCCCGACCACTGTGACTCGGTTGACTCGTTTGACACGGTTGGATCTCTCCTCCAACAATTTTACGGGTACAATCCCTTTCTCAATCAACAATTTGACCCACTTGAGTGGTCTATTCTTGGAAAACAATAGATTCTCTGGTAATCTTCCAAGCATTACAGCCAAATTGGTCGGCTTCAACGTTTCCAATAACCACCTTAATGGTTCGATCCCTGAAACCCTCTCGAATTTCACCGCCTCCTCATTTGCCGGGAACCTAGGTCTCTGCGGAGGACCATTGAAACCGTGTAACCCATTCTTTCCGGCTCCGGCGCCGTCACCATCCTCTGTTGTACCCTCAACCCCAGTCCACAAAAAGTCCAAGAAGCTTTCGACAGCTGCCATTATCGGAATTGCAGTTGGGGGTGGTCTGGTTGCCTTGTTACTCCTCCTCCTCCTATTATTCTGCCTCTGCAAACGCCGACTGGGGCAGTCCCCAAAGCCGCCGAAGCCCGTTACGGCGGCGCGTGCTGCACCGACGGAGGCTGGAACATCATCTTCGAAAGACGATATCACTGGTGGGTCTGCGGAGGCAGAGAGGAACAAGCTGGTGTTCTTTGAAGGCGGAATATACAGCTTCGATTTGGAAGATTTGCTGAGGGCATCTGCAGAAGTTCTGGGAAAGGGAAGCGTAGGGACATCCTATAAGGCCGTATTAGAGGAAGGGACTACGGTGGTGGTAAAGAGGTTGAAAGATGTAACTGTGACGAAGAAAGAATTTGAAGCACAAATGGAGGTTCTGGGGAAGATCAAGCACGAGAATGTAGTTCCTCTCAGAGCCTTCTACTACTCAAAGGACGAGAAATTGCTGGTTTACGATTACATGCCCGCCGGTAGCTTATCTGCTCTGCTTCACGGGAGTAGAGGCTCGGGGAGGACGCCACTTGACTGGGATAACCGGATGAGAATAGCAGTGGGAGCCGGGAGAGGGCTGGTCCACCTACACGTGTCGGGAAAAGTGGTCCACGGCAACGTAAAATCTTCCAACGTCCTGCTCCGAGGGGCCGACCAGGACGCATGCGTTTCGGACTTCGGGCTCAACCCGTTATTCGGGAACTCAACCCCGTCCAATCGGGTTGCGGGCTATCGGGCCCCGGAGGTTGTAGAAACCCGGAAGGCGACCTTCAAATCGGACGTGTACAGCTTCGGCGTATTGCTGCTGGAGCTGCTAACGGGGAAGGCGCCGAACCAGGCATCGCTTGGGGAGGAGGGAATTGACCTCCCGAGGTGGGTGCAGTCGGTGGTTCGGGAAGAATGGACGGCGGAGGTGTTCGACGCAGAGCTGATGAGGTACCAGAATATAGAGGAAGAGATGGTTCAGCTGTTGCAAATAGCGATGGCATGTGTTTCGGTGGTCCCGGATCAGAGACCAAACATGGAAGAGGTGGTGCGTATGATGGAGGATATCAACCGGGGCGAGACCGATGATGGGTTACGACAGTCGTCCGATGATCCTTCCAAGGGATCGGACGGTCATACGCCACCCCCCGAGTCAAGGACTCCGGCAAGATCGATCACACCTTAG 1965 0.5338 MALIFDAWSVMILVFFSLLQMSWRVHTEPTQDKQALLAFISQTRHANRVQWNASDSACNWVGVKCDAARSFVYSLRLPGVGLVGRIPPDTIGRLTQLRVLSLRSNGLVGEIPADLSNLTSLRNIYLQDNDLSGEFPTTVTRLTRLTRLDLSSNNFTGTIPFSINNLTHLSGLFLENNRFSGNLPSITAKLVGFNVSNNHLNGSIPETLSNFTASSFAGNLGLCGGPLKPCNPFFPAPAPSPSSVVPSTPVHKKSKKLSTAAIIGIAVGGGLVALLLLLLLLFCLCKRRLGQSPKPPKPVTAARAAPTEAGTSSSKDDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVTVTKKEFEAQMEVLGKIKHENVVPLRAFYYSKDEKLLVYDYMPAGSLSALLHGSRGSGRTPLDWDNRMRIAVGAGRGLVHLHVSGKVVHGNVKSSNVLLRGADQDACVSDFGLNPLFGNSTPSNRVAGYRAPEVVETRKATFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRYQNIEEEMVQLLQIAMACVSVVPDQRPNMEEVVRMMEDINRGETDDGLRQSSDDPSKGSDGHTPPPESRTPARSITP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0993 654 CDD STKc_IRAK 353 616 - -
Glsi13g0993 654 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 627 - -
Glsi13g0993 654 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Glsi13g0993 654 MobiDBLite consensus disorder prediction 292 320 - -
Glsi13g0993 654 Gene3D Phosphorylase Kinase; domain 1 314 421 - -
Glsi13g0993 654 SUPERFAMILY Protein kinase-like (PK-like) 351 613 IPR011009 -
Glsi13g0993 654 MobiDBLite consensus disorder prediction 615 633 - -
Glsi13g0993 654 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Glsi13g0993 654 Pfam Leucine rich repeat 83 131 IPR001611 GO:0005515
Glsi13g0993 654 ProSiteProfiles Protein kinase domain profile. 347 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0993 654 FunFam Probable inactive receptor kinase RLK902 29 187 - -
Glsi13g0993 654 MobiDBLite consensus disorder prediction 615 654 - -
Glsi13g0993 654 PANTHER OS05G0588300 PROTEIN 11 626 - -
Glsi13g0993 654 FunFam pollen receptor-like kinase 1 316 421 - -
Glsi13g0993 654 Gene3D Ribonuclease Inhibitor 189 233 IPR032675 -
Glsi13g0993 654 Gene3D Transferase(Phosphotransferase) domain 1 422 634 - -
Glsi13g0993 654 SUPERFAMILY L domain-like 52 220 - -
Glsi13g0993 654 Pfam Protein kinase domain 350 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0993 Glsi-ChrGlsi13 28051012 28053739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0993 32 639 Receptor kinase-like Gene Family AT5G58300 55.429 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi13g0993 Pkinase 2.7e-37 CL0016