Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0988 ATGGCTTCACCATCCGAACTGAGCCTGGATTGCAAACCCCATAGCTATTCCATGCTACTGAAATCTTTTGGAGATCAGATTGATCATACCTACAAGCTTGAAGAGTTCCTTTCTCGACTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTTACAAATGCTATGGAGACTTCAAGGCAGCAACTTCAGGCCTTCAGAGCAAATCAAGGCACAAGACCAGTACTCGAAGAATTCATACCCATAAAGCATTCAATCTCTGAAAGCACTGAGAAGGCATCAAACATATCAGACAAGGCAAATTGGATGACATCTGCTCAATTATGGAGCCAAGAAAATGAAGGAACCAAGCCACAATCCACAATTGCATCACATAAAGAAGCTGATATTGGCTTCAATGTCAGCCCTAAGCTAGCTCTAGACAACAAACAGAGGAATGGTGGGGCCTTCCTTCCATTCTCCAAAGAAAGAAACTCATGCCAAGGCTCCGCATTGCGGGTCATCCCTGAGTTGGCCCTTGCCTCTGTTGAGAACGAAATGGAGGACAAGAAATGTCCAGAGGCAGAGAATGGAGCGTCATGTCCAAAGAGGGAAAATTATGGTAAAGGAGGCAATGGCGGAGTGGTAATTGATCAAGGAAAAGGGGCTCCAGTTGCATCTGATCCACAAACACCCGGTACCACCACAACGCCCAATACTAGCCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCTGACCTGCACCGCCGATTTGTGAATGCTCTTCAGATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGACGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGACGACCCAGTCCAAGCCCACAACCAGCCGGGGCACCCCCACCCCAGCTTGTAGTCCTGGGAGGAATCTGGGTCCCAGAATACGCCACTGCCGCAGCCGCCGCGGCCCATTCAGGCGCCTCTGCCCTCTATGGTCCACATCCTACCTCCCATGCGCCGCCACCACACTACTGTACTGCCACTCCAGTTCACCAAGACTTCTACACTGCCGGGCCGCCGCAACCGCCCATGCCTCCCCCACCACATCACCACCCCCTCCACCACCACCTCCACATGTACAAAACCACGTCGCACCAGAGCTCACCGGAATCTGACATTCGAGGAGCCGGTGACAGGTCAGAGAGTATCGAGGATGGGAAGTCCGAGAGCAGCAGCTGGAGGGGAGATAGCGGTGAGAACGAAGGGGAGAGAAAGGGGTTGGCAGCACTGAGAGAAGATGGGGACGAGAGTAATGGGAGTGAGATCACTCTCAAATTCTAG 1392 0.5129 MASPSELSLDCKPHSYSMLLKSFGDQIDHTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMETSRQQLQAFRANQGTRPVLEEFIPIKHSISESTEKASNISDKANWMTSAQLWSQENEGTKPQSTIASHKEADIGFNVSPKLALDNKQRNGGAFLPFSKERNSCQGSALRVIPELALASVENEMEDKKCPEAENGASCPKRENYGKGGNGGVVIDQGKGAPVASDPQTPGTTTTPNTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQPAGAPPPQLVVLGGIWVPEYATAAAAAAHSGASALYGPHPTSHAPPPHYCTATPVHQDFYTAGPPQPPMPPPPHHHPLHHHLHMYKTTSHQSSPESDIRGAGDRSESIEDGKSESSSWRGDSGENEGERKGLAALREDGDESNGSEITLKF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0988 463 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 431 IPR044787 GO:0003700|GO:0006355
Glsi13g0988 463 Coils Coil 33 53 - -
Glsi13g0988 463 FunFam Myb family transcription factor 247 305 - -
Glsi13g0988 463 SUPERFAMILY Homeodomain-like 245 306 IPR009057 -
Glsi13g0988 463 Pfam Myb-like DNA-binding domain 250 301 IPR001005 -
Glsi13g0988 463 MobiDBLite consensus disorder prediction 221 250 - -
Glsi13g0988 463 MobiDBLite consensus disorder prediction 409 457 - -
Glsi13g0988 463 MobiDBLite consensus disorder prediction 370 463 - -
Glsi13g0988 463 MobiDBLite consensus disorder prediction 230 248 - -
Glsi13g0988 463 NCBIfam myb-like DNA-binding domain, SHAQKYF class 248 303 IPR006447 GO:0003677
Glsi13g0988 463 Gene3D - 247 305 - -
Glsi13g0988 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 305 IPR017930 -
Glsi13g0988 463 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0988 Glsi-ChrGlsi13 28022652 28024863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0988 1 463 G2-like Transcription Factor Family AT2G03500 51.025 6.33e-132 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi13g0988 Myb_DNA-binding 1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1042 02 6993651 6995646 Glsi13g0988 13 28022652 28024863 CCT
Glsi13g0988 13 28022652 28024863 Glsi13g0988 13 28022652 28024863 ECH