Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0977 ATGTGTGGCGAAGAAGAGCTAGAATTGTCAAAGGATGGCAGCCATTACAGTCTCTCTACTGGGATGTTACCTTCGCTTGGAGCCAGACGAAGTCGCAGGGTCAACCTCAGGACCTTCATTGTATCGCCTTATGACCGTCGTTACAGGGTGTGGGAGGGTTTTCTTGTCATTCTCGTGTTGTACACTGCATGGGTATCGCCATTTGAATTGGGGTTCCTTGAGAAACCACAAGCAATACTCTCTATTACAGATAATGTCGTCAATGCGCTTTTTTCTGTGGATATAATTCTCACCTTCTTCGTCGCTTACGTTGACAAAGCTACCTACCTGTTGGTTGACAACCCAAAAAAGATTGCCTGGAAATATGCAAGTTCCTGGTTGGCCTTTGATGTCATCTCCATTATTCCTTCAGAGCTTGTTCGGAAGATATCCCCTCCTACACTCCAATCATATGGACTCATCAATATGCTTCGGCTTTGGCGTCTTCGAAGAGTTAGTGCTCTATTTGCTAGATTGGAGAAGGACATAAACTACAACTATTTCTTCGTTCGGTATGCTAAGCTCATCTGTGTTACCCTTTTTGCTGTTCACTGTGCTGGATGCTTCTATTATCTTATTGCTGCCCGTTATCCTGATCACGAAAAGACTTGGATTGGACAACCTAATGAAGATTTCCTTCAACAGAACTTGTGGACAAGATATGTGACAACTATGTACTGGTCTATCACTACTTTAACCACTGTTGGCTATGGAGATTTGCATCCAGTGAATACAAGGGAGATGATCTTTGATATCTTTTACATGCTCTTCAATCTAGGATTAACGTCATATTTGATTGGCAACATGACCAACTTAGTTGTCCATGGTACAAGTCGAACCAGAGAATTTAGGGATACAATACAAGCTGCCTCAAGTTTTGCCCGGAGGAACCAATTGCCTGCTCGTCTGCAAGACCAGATGCTTGAACATATGTGTTTGAAGTTCAGAATAGACTCAGAGGGATTGCAGCAACAAGAGAGCCTTGATGCTCTTCCTAAAGCTATGAAATCAAGCATTTCACATTATCTTTTTTACCCTCTGATGGAGAATGCCTACTTGTTTCGTGGGGTTTCAGACGACTTCCTTCTTCAACTGGTCTCAGAGATGAAAGCTGAGTATTTTCCTCCGAAAGAAGATGTTATCTTGCAGAACGAAGCACCAACAGATTTTTATATACTAGTCACTGGTGCTGTGGTTGTAGGAGAGGCAAATGCTGGTGATATCTGTGGTGAGATTGGGGTGCTTTGTTATAGGCCACAGCTCTTTACAGTGCGAACCAAGCGATTAAGCCAGTTACTGAGGCTGAACCGCACTACATTTTTAAGTACTGTTCAGGCCAATGTGGGAGATGGAGAACTAATCATGAATAATTTCCTTCAGCATTTGAAAGAGCTCAAGGACCCATTTATGGAGGGAGTTTTAGGGGAGACAGAGGACATGCTAGCTCGTGGTAGGATGGCTCTGCCACTGGGTCTTTCCTTTGCAGCACAAAGGGGAAATGACTCTTTGTTTCATCAATTGTTGAAACGGGGCTTTGATCCAAATGAACCCGACAACAACGGGAGGACTGCTTTGCATATAGCAGCATCTAAAGGAAGTGAGAACTATGTTAAGATTCTATTGAATTATGGGGCAGATCCCAACATTACAGATTTTGATGGTAATGTCCCACTATGGGAGGCTATATTGGGTGGACATGAATCAGTGAGCAAGCTTTTGGTAGAAAATGGTGCTAACTTGCAATGTGGAGATGTAGGTCAATTTGCATGCACTGCCGCTGAACAGAACAATCTGAACTTGCTCAAGTGTATAGTGACCTATGGTGGAGATGTAACTCTTCCTAGGAGCGACGTTGGCACCACTGCTCTACACATTGCAGTCTGTGAAGACAATGCTGAGATTGTCAAGTTCCTTTTGGATCATGGAGCTGACATTGACAAGCCAGACAAGCATGGTTGGAACCCCAGAGATCTAGCAGCTCAACAGGGACACGAGGAAATTAAGGTTCTTTTTGAGTCTATTGGGGAGCCTAAGGTTGAATCTGTTTTAGCAATTCCTGAGGGGCAGAATAGTAGCAGGTGCTTGAAAAAATTTACAAGTGAGCCAACAATGCCTTGGTCTCAGGAAGGTTCATTTCCAGGAACAAATGGGTCATGGAGCCATAACCATCCAAGGAGGAGGAGCAAAAACTTGCGTAACTCACTATTTGGGATAATGTCAGCAGCACATAGAAGGGAGAAAGAGTTGCCGTTCTCTCCCAACGTAAACCATACGAGAAATGGAGGTAGCCCAGCTAGAGTAACAATTAGTTGCCCAGAAAAGGGTGAAGTTGCAGGGAAGCTTGTGTCTCTACCAGGGAGCTTTAAGGAGCTACTTGAGATTGGAGCCAATAAATTTGGTGTCTTTTATGCTAAGGTTGTAAGCAAAGATGGAGCTGAAATTGATGATATAGATGTGATTAGAGATGGTGATCATATTTTGTTTGTCAGTGCTGCTAAGCCGCCAGAACCCAGTTTCCCAATACCTTGA 2568 0.4361 MCGEEELELSKDGSHYSLSTGMLPSLGARRSRRVNLRTFIVSPYDRRYRVWEGFLVILVLYTAWVSPFELGFLEKPQAILSITDNVVNALFSVDIILTFFVAYVDKATYLLVDNPKKIAWKYASSWLAFDVISIIPSELVRKISPPTLQSYGLINMLRLWRLRRVSALFARLEKDINYNYFFVRYAKLICVTLFAVHCAGCFYYLIAARYPDHEKTWIGQPNEDFLQQNLWTRYVTTMYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTSYLIGNMTNLVVHGTSRTREFRDTIQAASSFARRNQLPARLQDQMLEHMCLKFRIDSEGLQQQESLDALPKAMKSSISHYLFYPLMENAYLFRGVSDDFLLQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVVVGEANAGDICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLSTVQANVGDGELIMNNFLQHLKELKDPFMEGVLGETEDMLARGRMALPLGLSFAAQRGNDSLFHQLLKRGFDPNEPDNNGRTALHIAASKGSENYVKILLNYGADPNITDFDGNVPLWEAILGGHESVSKLLVENGANLQCGDVGQFACTAAEQNNLNLLKCIVTYGGDVTLPRSDVGTTALHIAVCEDNAEIVKFLLDHGADIDKPDKHGWNPRDLAAQQGHEEIKVLFESIGEPKVESVLAIPEGQNSSRCLKKFTSEPTMPWSQEGSFPGTNGSWSHNHPRRRSKNLRNSLFGIMSAAHRREKELPFSPNVNHTRNGGSPARVTISCPEKGEVAGKLVSLPGSFKELLEIGANKFGVFYAKVVSKDGAEIDDIDVIRDGDHILFVSAAKPPEPSFPIP 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0977 855 SUPERFAMILY cAMP-binding domain-like 291 475 IPR018490 -
Glsi13g0977 855 MobiDBLite consensus disorder prediction 718 740 - -
Glsi13g0977 855 FunFam Potassium channel KAT3 50 288 - -
Glsi13g0977 855 ProSiteProfiles Ankyrin repeat profile. 566 598 IPR002110 GO:0005515
Glsi13g0977 855 MobiDBLite consensus disorder prediction 718 734 - -
Glsi13g0977 855 Gene3D - 52 287 - -
Glsi13g0977 855 ProSiteProfiles cAMP/cGMP binding motif profile. 366 474 IPR000595 -
Glsi13g0977 855 CDD CAP_ED 366 460 IPR000595 -
Glsi13g0977 855 ProSiteProfiles Ankyrin repeat profile. 533 565 IPR002110 GO:0005515
Glsi13g0977 855 ProSiteProfiles Ankyrin repeat profile. 631 663 IPR002110 GO:0005515
Glsi13g0977 855 PRINTS EAG/ELK/ERG potassium channel family signature 234 251 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0977 855 PRINTS EAG/ELK/ERG potassium channel family signature 278 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0977 855 PRINTS EAG/ELK/ERG potassium channel family signature 61 68 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0977 855 PRINTS EAG/ELK/ERG potassium channel family signature 84 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0977 855 PRINTS EAG/ELK/ERG potassium channel family signature 95 104 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0977 855 PRINTS EAG/ELK/ERG potassium channel family signature 260 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi13g0977 855 ProSiteProfiles Ankyrin repeat region circular profile. 566 593 - -
Glsi13g0977 855 FunFam Potassium channel KAT2 354 479 - -
Glsi13g0977 855 PANTHER POTASSIUM CHANNEL AKT1 14 843 IPR045319 GO:0005249|GO:0006813
Glsi13g0977 855 SMART ANK_2a 631 660 IPR002110 GO:0005515
Glsi13g0977 855 SMART ANK_2a 597 626 IPR002110 GO:0005515
Glsi13g0977 855 SMART ANK_2a 533 562 IPR002110 GO:0005515
Glsi13g0977 855 SMART ANK_2a 664 692 IPR002110 GO:0005515
Glsi13g0977 855 SMART ANK_2a 500 529 IPR002110 GO:0005515
Glsi13g0977 855 SMART ANK_2a 566 595 IPR002110 GO:0005515
Glsi13g0977 855 Pfam KHA, dimerisation domain of potassium ion channel 779 840 IPR021789 -
Glsi13g0977 855 Gene3D - 502 685 IPR036770 -
Glsi13g0977 855 Pfam Ion transport protein 49 293 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi13g0977 855 Pfam Ankyrin repeats (3 copies) 505 594 IPR002110 GO:0005515
Glsi13g0977 855 Pfam Ankyrin repeats (3 copies) 605 686 IPR002110 GO:0005515
Glsi13g0977 855 SUPERFAMILY Ankyrin repeat 505 687 IPR036770 -
Glsi13g0977 855 Gene3D Jelly Rolls 331 479 IPR014710 -
Glsi13g0977 855 ProSiteProfiles KHA domain profile. 779 855 IPR021789 -
Glsi13g0977 855 SUPERFAMILY Voltage-gated potassium channels 43 287 - -
Glsi13g0977 855 Pfam Cyclic nucleotide-binding domain 386 459 IPR000595 -
Glsi13g0977 855 SMART cnmp_10 366 472 IPR000595 -
Glsi13g0977 855 PRINTS Ankyrin repeat signature 534 549 IPR002110 GO:0005515
Glsi13g0977 855 PRINTS Ankyrin repeat signature 647 661 IPR002110 GO:0005515
Glsi13g0977 855 ProSiteProfiles Ankyrin repeat region circular profile. 631 663 - -
Glsi13g0977 855 ProSiteProfiles Ankyrin repeat region circular profile. 533 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0977 Glsi-ChrGlsi13 27961220 27965847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0977 8 841 Ion Channels AT2G25600 61.449 0.0 1027