Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0962 ATGAGTTTTTCTGATCATCCCGCTGCCGCCTTCATGCTATCGCCGCCGCTTTTTGCAGTAGATGACGATGCCAATGGTGGCTGGCCTGAATTTCCAATTAACAACGAACTATTCGATCCGCATCCAACATTTGATCAGCCTCCTTCGTTCAAGAGGCCCAGAACTTCTGAGAGCAACCAGTACAATGCCTTGCCATTTCCGCCCATGAATCCCAGGATGCATCCACCAAATCATTCAGCCAACAGAGGAACGAGCCATCTTTTCTTCAAGACTCGCATGTGTGCGAAATTCAAATTGGGTACGTGCAGGAACGGTGAGAATTGCAACTTTGCACATGGCATTGACGATATGAGGCAGCCACCTCCAAATTGGCAGGAACTTGTTGGCTTGCGTGATGAAGAAAGGTCATCTGGAAATTGGGACGATGACCAAAAAATAATACACAAGATGAAGCTATGCAAGAAGTATTACAATGGCGAGGAATGCCCTTATGGCGAGAGGTGTAATTTTCTTCATGAAGACCCGTCCAAATTCAGGGATGATTCAGGGAGGTGCAGGGAGAGCTCAGCAATAAGTCTCGTAGCTAATGGGTCGCCAAATTCTCACTTGAATGGCTCTAACAATTCAGACAGTAATAAGGCTGTGAACACAGGCCTAGATGTTTTGAAGGCAAATGTGAAGTCCACGTATTGGAAGACCAAGTTATGTATCAAGTGGGAGACAACAGGCCAATGCCCCTTCGGGGATAAATGTCACTTTGCCCATGGGCAAGCAGACTTACAAATGCCTGTTGTTGGGCGCATTGAAGCAGAAGCTACTGGCTCTTTTGCAGTTCCAATAAGAGCTCCATCGGTTCCTGTGAATGTTGCATCTCCTACCAACACTGCAAGTCTACCCGATTCAAATGAAGAGGAACAGGGAAAGAAGAATTTGCTCAAGTGGAAAGGACCCAAGAAGATCAGTCGAATTTATGCTGATTGGCTTGATGATTTACCACTGCCAAGGAAGGTGGATAGCTGA 1020 0.4637 MSFSDHPAAAFMLSPPLFAVDDDANGGWPEFPINNELFDPHPTFDQPPSFKRPRTSESNQYNALPFPPMNPRMHPPNHSANRGTSHLFFKTRMCAKFKLGTCRNGENCNFAHGIDDMRQPPPNWQELVGLRDEERSSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDSGRCRESSAISLVANGSPNSHLNGSNNSDSNKAVNTGLDVLKANVKSTYWKTKLCIKWETTGQCPFGDKCHFAHGQADLQMPVVGRIEAEATGSFAVPIRAPSVPVNVASPTNTASLPDSNEEEQGKKNLLKWKGPKKISRIYADWLDDLPLPRKVDS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0962 339 MobiDBLite consensus disorder prediction 49 65 - -
Glsi13g0962 339 SUPERFAMILY CCCH zinc finger 147 174 IPR036855 GO:0046872
Glsi13g0962 339 FunFam Zinc finger CCCH domain-containing protein 83 119 - -
Glsi13g0962 339 SUPERFAMILY CCCH zinc finger 229 261 IPR036855 GO:0046872
Glsi13g0962 339 PANTHER CCCH ZINC FINGER/TIS11-RELATED 47 181 IPR045877 GO:0003729
Glsi13g0962 339 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Glsi13g0962 339 SMART c3hfinal6 147 174 IPR000571 GO:0046872
Glsi13g0962 339 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Glsi13g0962 339 MobiDBLite consensus disorder prediction 38 82 - -
Glsi13g0962 339 MobiDBLite consensus disorder prediction 289 310 - -
Glsi13g0962 339 FunFam Zinc finger CCCH domain-containing protein 39 144 176 - -
Glsi13g0962 339 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Glsi13g0962 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 231 257 IPR000571 GO:0046872
Glsi13g0962 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 113 IPR000571 GO:0046872
Glsi13g0962 339 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 172 IPR000571 GO:0046872
Glsi13g0962 339 ProSiteProfiles Zinc finger C3H1-type profile. 147 175 IPR000571 GO:0046872
Glsi13g0962 339 Gene3D - 81 119 - -
Glsi13g0962 339 Gene3D - 144 180 - -
Glsi13g0962 339 Gene3D - 223 262 - -
Glsi13g0962 339 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Glsi13g0962 339 FunFam Zinc finger CCCH domain-containing protein 225 262 - -
Glsi13g0962 339 SUPERFAMILY CCCH zinc finger 86 119 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0962 Glsi-ChrGlsi13 27864098 27865970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0962 232 265 C3H Transcription Factor Family AT1G68200 58.824 1.70e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi13g0962 zf-CCCH 1.6e-11 CL0537