Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0953 ATGCTTAATGGTTTGTTCATTGTTTTTGTGCAGACAGGAGAGGCTGTGAACCCAAAAGCTTACCCTTTGGCCGATGCCCAACTCTCAATAACAATACTGGATCTTGTTCAGCAAGCTGCCAATTATAAGCAGCTCAAAAAGGGTGCTAATGAAGCAACTAAGACGCTGAACAGGGGTATTTCTGAGTTCGTCGTGATGGCAGCAGACACTGAGCCACTTGAGATTCTTCTTCATCTTCCTCTACTTGCTGAGGATAAGAATGTGCCCTACGTATTTGTTCCATCAAAACAAGCACTTGGGCGAGCATGTGGGGTCACACGGCCAGTGATTGCATGTTCTGTGACGACTAATGAGGGAAGTCAATTGAAATCCCAAATACAACAACTAAAGGATGCTATTGAGAAGCTGTTAATCTGA 417 0.4412 MLNGLFIVFVQTGEAVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0953 138 ProSitePatterns Ribosomal protein L7Ae signature. 83 100 IPR004037 GO:0042254|GO:1990904
Glsi13g0953 138 SUPERFAMILY L30e-like 16 136 IPR029064 -
Glsi13g0953 138 CDD SNU13 17 138 - -
Glsi13g0953 138 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 33 121 IPR004038 -
Glsi13g0953 138 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 9 135 - -
Glsi13g0953 138 Gene3D - 10 138 IPR029064 -
Glsi13g0953 138 PRINTS High mobility group-like nuclear protein signature 18 31 IPR002415 GO:0003723|GO:0005730
Glsi13g0953 138 PRINTS High mobility group-like nuclear protein signature 48 58 IPR002415 GO:0003723|GO:0005730
Glsi13g0953 138 PRINTS High mobility group-like nuclear protein signature 31 46 IPR002415 GO:0003723|GO:0005730
Glsi13g0953 138 PRINTS High mobility group-like nuclear protein signature 92 104 IPR002415 GO:0003723|GO:0005730
Glsi13g0953 138 PRINTS Ribosomal protein L7A/RS6 family signature 64 77 IPR018492 -
Glsi13g0953 138 PRINTS Ribosomal protein L7A/RS6 family signature 90 104 IPR018492 -
Glsi13g0953 138 PRINTS Ribosomal protein L7A/RS6 family signature 45 59 IPR018492 -
Glsi13g0953 138 PRINTS Ribosomal protein L7A/RS6 family signature 80 90 IPR018492 -
Glsi13g0953 138 FunFam NHP2-like protein 1 homolog 11 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0953 Glsi-ChrGlsi13 27809121 27810848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0953 45 134 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 8.43e-06 42.0