Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0945 ATGGTGCATTCAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTCTCCGAAATTCGCCACCCTCTTCTGAAGAGGAGGGTGTGGCTAGGGACATTTGAGACAGCAGAAGAAGCAGCGCGAGCCTATGATCAAGCTGCGATTTTGATGAGTGGGAGAAATGCCAAAACCAATTTCCCAATAACCCAAACTCCAGAGGGTGACCCAGAGAGTATTACCACGACAACTGATGACAATCAGGAACGCCCAGCTTATTCAAATTCATGCCCAAAGGATCTGCAGGAAATCCTACACGCAAAGCTTAGGAAATGTGGGAAGCTGCCATCCCCTTCCATGACCTGCTTGAGGCTTGACACTGAGAACTCTCACATTGGAGTTTGGCAGAAGCGTGCTGGTCAGCGTTCTGATTCCAACTGGGTCATGAGGGTTCAGTTGGAAAACAAGAGTAGTGGGAGTACCAATCATGAGGATCATAGTCCTCTGCTTACCACGTCGTCTGATCAGTCCCCAGCAGAAGTGTCAGGGCAGGGAGGAGGGGACATTGATGAAGAGGAGAGAATTGCCCTGCAAATGATAGAAGAACTTCTCAACAGGAATTGTCCCAGTCCTGCCCCTTCATTTAATAACATATCACAGGGGAACGATGCCAGCTTTTTTCTATAA 672 0.4881 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPESITTTTDDNQERPAYSNSCPKDLQEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMRVQLENKSSGSTNHEDHSPLLTTSSDQSPAEVSGQGGGDIDEEERIALQMIEELLNRNCPSPAPSFNNISQGNDASFFL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0945 223 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Glsi13g0945 223 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 159 - -
Glsi13g0945 223 MobiDBLite consensus disorder prediction 62 91 - -
Glsi13g0945 223 MobiDBLite consensus disorder prediction 150 176 - -
Glsi13g0945 223 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Glsi13g0945 223 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Glsi13g0945 223 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Glsi13g0945 223 MobiDBLite consensus disorder prediction 62 90 - -
Glsi13g0945 223 MobiDBLite consensus disorder prediction 150 182 - -
Glsi13g0945 223 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Glsi13g0945 223 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Glsi13g0945 223 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Glsi13g0945 223 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Glsi13g0945 223 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0945 Glsi-ChrGlsi13 27723022 27723819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0945 1 202 AP2-EREBP Transcription Factor Family AT1G15360 60.294 8.88e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi13g0945 AP2 9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0945 13 27723022 27723819 Glsi08g1588 08 11388564 11389593 ECH
Glsi13g0945 13 27723022 27723819 Glsi13g0945 13 27723022 27723819 ECH