Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0920 ATGGACCTTCAATTGGGTCTCGCTCCCCCACGCAACCCTCAAGACCTCCTCGCTTCAGTCCCTTGCAACCATGACAAGAAACGTAGTTTTAGCCAACTCTCTGAGCATAACACAGACGTTCTTCTTCCCCCCACTCTGCCTCTTCTGCCATTAACACCTGACGACTACCATACTGGCTGCTCTGCTATCACCAAGAATACTGGGGATGACACAGAAGGGGCAGTGGGTTGGCCACCCATAATTTCCCAGAGGAAGAAACTTCGCTATGGCGTTGAGGCTGCAGGGAATGATGATGAAGATCACGGTTCTGTTGACCTTATCAGAGGGTATGTGAAGGTGAAGATGGAGGGAGTAAGAATTGCAAGAAAGGTTGATCTGAGCTCGCATCATTCTTTTCAAAAGCTCAAGGAAACCTTGATCGGCATGTTTGGCAGATGTCATCAGCATTCAAACTGCTATGAACTAGCTTATCAGGACAAACAAGGTGATTGGCTGCTTGCAGAAGATGTTCCATGGAGAAAAGCACCAAGTCTTATCTCTGAGCTCTTGCAATGGTTTTGCCAAGCTCTAACATTCTGGGTTTCTTCATCAGTTTGCAGATTGTAG 606 0.4719 MDLQLGLAPPRNPQDLLASVPCNHDKKRSFSQLSEHNTDVLLPPTLPLLPLTPDDYHTGCSAITKNTGDDTEGAVGWPPIISQRKKLRYGVEAAGNDDEDHGSVDLIRGYVKVKMEGVRIARKVDLSSHHSFQKLKETLIGMFGRCHQHSNCYELAYQDKQGDWLLAEDVPWRKAPSLISELLQWFCQALTFWVSSSVCRL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0920 201 Gene3D - 109 189 - -
Glsi13g0920 201 SUPERFAMILY CAD & PB1 domains 110 181 - -
Glsi13g0920 201 ProSiteProfiles PB1 domain profile. 108 190 IPR000270 GO:0005515
Glsi13g0920 201 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 181 IPR003311 GO:0005634|GO:0006355
Glsi13g0920 201 Pfam AUX/IAA family 70 146 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0920 Glsi-ChrGlsi13 27506835 27508458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0920 107 174 B3 DNA Binding Superfamily AT1G19850 33.333 1.72e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi13g0920 AUX_IAA 4.1e-15 CL0072